* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/funMoDisco.Rcheck’
* using R Under development (unstable) (2025-05-04 r88189)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* checking for file ‘funMoDisco/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘funMoDisco’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘funMoDisco’ can be installed ... [187s/157s] OK
* used C++ compiler: ‘g++ (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
* checking C++ specification ... OK
  Not all R platforms support C++20
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [26s/26s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking examples with --run-donttest ... ERROR
Running examples in ‘funMoDisco-Ex.R’ failed
The error most likely occurred in:

> ### Name: discoverMotifs
> ### Title: Functional Motif Discovery
> ### Aliases: discoverMotifs
> 
> ### ** Examples
> 
> ## No test: 
> # Example 1: Discover motifs using ProbKMA
> 
> # Define dissimilarity measure and weight parameter
> diss <- 'd0_d1_L2'
> alpha <- 0.5
> 
> # Define number of motifs and their minimum lengths
> K <- c(2, 3)
> c <- c(61, 51)
> n_init <- 10
> 
> # Load simulated data
> data("simulated200")
> 
> # Perform motif discovery using ProbKMA
> results <- funMoDisco::discoverMotifs(
+   Y0 = simulated200$Y0,
+   method = "ProbKMA",
+   stopCriterion = "max",
+   name = tempdir(),
+   plot = TRUE,
+   probKMA_options = list(
+     Y1 = simulated200$Y1,
+     K = K,
+     c = c,
+     n_init = n_init,
+     diss = diss,
+     alpha = alpha
+   ),
+   worker_number = NULL
+ )
Error in .check_ncores(length(names)) : 31 simultaneous processes spawned
Calls: <Anonymous> -> <Anonymous> -> makePSOCKcluster -> .check_ncores
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘tinytest.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/funMoDisco.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 5:04.43, 285.24 + 48.32