* using log directory ‘/data/localhost/ripley/R/packages/tests-donttest/fibos.Rcheck’
* using R Under development (unstable) (2026-08-24 r90445)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)
    GNU Fortran (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)
* running under: Fedora Linux 44 (Server Edition)
* using session charset: UTF-8
* current time: 2026-08-25 04:54:02 UTC
* checking for file ‘fibos/DESCRIPTION’ ... OK
* this is package ‘fibos’ version ‘2.0.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘fibos’ can be installed ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘glue’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking examples with --run-donttest ... [10s/10s] ERROR
Running examples in ‘fibos-Ex.R’ failed
The error most likely occurred in:

> ### Name: get_radii
> ### Title: Load Radii Values
> ### Aliases: get_radii
> 
> ### ** Examples
> 
> ## No test: 
> library(fibos)
> fibos_config()
Installing the 'Python' 'fibos' module...
Warning in check_forbidden_install("Python packages") :
  cannot install Python packages during R CMD check
Warning in check_forbidden_install("Python packages") :
  cannot install Python packages during R CMD check
Using virtual environment 'fibos_venv' ...
+ /data/localhost/ripley/.virtualenvs/fibos_venv/bin/python -m pip install --upgrade --no-user fibos
Requirement already satisfied: fibos in /data/localhost/ripley/.virtualenvs/fibos_venv/lib64/python3.14/site-packages (2.3.3)
Requirement already satisfied: numpy>=1.22.4 in /data/localhost/ripley/.virtualenvs/fibos_venv/lib64/python3.14/site-packages (from fibos) (2.5.1)
Requirement already satisfied: biopython>=1.84 in /data/localhost/ripley/.virtualenvs/fibos_venv/lib64/python3.14/site-packages (from fibos) (1.87)
Requirement already satisfied: testresources>=2.0.1 in /data/localhost/ripley/.virtualenvs/fibos_venv/lib64/python3.14/site-packages (from fibos) (2.1.2)
Requirement already satisfied: pandas>=2.2.3 in /data/localhost/ripley/.virtualenvs/fibos_venv/lib64/python3.14/site-packages (from fibos) (3.0.5)
Requirement already satisfied: python-dateutil>=2.8.2 in /data/localhost/ripley/.virtualenvs/fibos_venv/lib64/python3.14/site-packages (from pandas>=2.2.3->fibos) (2.9.0.post0)
Requirement already satisfied: six>=1.5 in /data/localhost/ripley/.virtualenvs/fibos_venv/lib64/python3.14/site-packages (from python-dateutil>=2.8.2->pandas>=2.2.3->fibos) (1.17.0)

[notice] A new release of pip is available: 26.1.2 -> 26.2.1
[notice] To update, run: /data/localhost/ripley/.virtualenvs/fibos_venv/bin/python -m pip install --upgrade pip
> #Loads the radius values that have been configured for code execution.
> radii = get_radii()
Error in py_call_impl(callable, call_args$unnamed, call_args$named) : 
  AttributeError: module 'pkgutil' has no attribute 'get_loader'
Run `reticulate::py_last_error()` for details.
Calls: get_radii -> <Anonymous> -> <Anonymous> -> py_call_impl
Execution halted
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/data/localhost/ripley/R/packages/tests-donttest/fibos.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 1:22.77, 52.77 + 25.86