* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/fdesigns.Rcheck’
* using R Under development (unstable) (2025-12-20 r89211)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* checking for file ‘fdesigns/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘fdesigns’ version ‘1.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘fdesigns’ can be installed ... [39s/40s] OK
* used C++ compiler: ‘g++ (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [12s/12s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking examples with --run-donttest ... ERROR
Running examples in ‘fdesigns-Ex.R’ failed
The error most likely occurred in:

> ### Name: P
> ### Title: Compute Profile Factor Polynomials
> ### Aliases: P
> 
> ### ** Examples
> 
> ## Example 1:
> 
> d <- list(x1=matrix(runif(48), nrow=12))
> within(d, example1 <- P(x = x1, deg = 2))
$x1
            [,1]      [,2]       [,3]      [,4]
 [1,] 0.26550866 0.6870228 0.26722067 0.7942399
 [2,] 0.37212390 0.3841037 0.38611409 0.1079436
 [3,] 0.57285336 0.7698414 0.01339033 0.7237109
 [4,] 0.90820779 0.4976992 0.38238796 0.4112744
 [5,] 0.20168193 0.7176185 0.86969085 0.8209463
 [6,] 0.89838968 0.9919061 0.34034900 0.6470602
 [7,] 0.94467527 0.3800352 0.48208012 0.7829328
 [8,] 0.66079779 0.7774452 0.59956583 0.5530363
 [9,] 0.62911404 0.9347052 0.49354131 0.5297196
[10,] 0.06178627 0.2121425 0.18621760 0.7893562
[11,] 0.20597457 0.6516738 0.82737332 0.0233312
[12,] 0.17655675 0.1255551 0.66846674 0.4772301

$example1
             [,1]      [,2]        [,3]        [,4]      [,5]       [,6]
 [1,] 0.070494850 0.1824105 0.070949403 0.210877564 0.1824105 0.47200039
 [2,] 0.138476197 0.1429342 0.143682282 0.040168403 0.1429342 0.14753567
 [3,] 0.328160976 0.4410062 0.007670697 0.414580250 0.4410062 0.59265581
 [4,] 0.824841390 0.4520143 0.347287721 0.373522641 0.4520143 0.24770454
 [5,] 0.040675601 0.1447307 0.175400929 0.165570034 0.1447307 0.51497632
 [6,] 0.807104026 0.8911182 0.305766028 0.581312204 0.8911182 0.98387770
 [7,] 0.892411363 0.3590098 0.455409163 0.739617218 0.3590098 0.14442674
 [8,] 0.436653723 0.5137341 0.396191774 0.365445174 0.5137341 0.60442107
 [9,] 0.395784480 0.5880362 0.310493768 0.333254027 0.5880362 0.87367387
[10,] 0.003817543 0.0131075 0.011505691 0.048771378 0.0131075 0.04500445
[11,] 0.042425526 0.1342282 0.170417868 0.004805634 0.1342282 0.42467870
[12,] 0.031172287 0.0221676 0.118022316 0.084258190 0.0221676 0.01576408
            [,7]       [,8]        [,9]      [,10]       [,11]       [,12]
 [1,] 0.18358670 0.54566093 0.070949403 0.18358670 0.071406886 0.212237307
 [2,] 0.14830786 0.04146155 0.143682282 0.14830786 0.149084092 0.041678555
 [3,] 0.01030843 0.55714266 0.007670697 0.01030843 0.000179301 0.009690731
 [4,] 0.19031420 0.20469097 0.347287721 0.19031420 0.146220550 0.157266389
 [5,] 0.62410625 0.58912625 0.175400929 0.62410625 0.756362167 0.713969477
 [6,] 0.33759424 0.64182295 0.305766028 0.33759424 0.115837440 0.220226288
 [7,] 0.18320740 0.29754199 0.455409163 0.18320740 0.232401238 0.377436316
 [8,] 0.46612959 0.42995544 0.396191774 0.46612959 0.359479179 0.331581673
 [9,] 0.46131564 0.49513166 0.310493768 0.46131564 0.243583022 0.261438494
[10,] 0.03950467 0.16745602 0.011505691 0.03950467 0.034676995 0.146992024
[11,] 0.53917749 0.01520433 0.170417868 0.53917749 0.684546608 0.019303614
[12,] 0.08392941 0.05991867 0.118022316 0.08392941 0.446847780 0.319012425
            [,13]      [,14]       [,15]       [,16]
 [1,] 0.210877564 0.54566093 0.212237307 0.630816956
 [2,] 0.040168403 0.04146155 0.041678555 0.011651826
 [3,] 0.414580250 0.55714266 0.009690731 0.523757533
 [4,] 0.373522641 0.20469097 0.157266389 0.169146656
 [5,] 0.165570034 0.58912625 0.713969477 0.673952818
 [6,] 0.581312204 0.64182295 0.220226288 0.418686894
 [7,] 0.739617218 0.29754199 0.377436316 0.612983710
 [8,] 0.365445174 0.42995544 0.331581673 0.305849162
 [9,] 0.333254027 0.49513166 0.261438494 0.280602834
[10,] 0.048771378 0.16745602 0.146992024 0.623083261
[11,] 0.004805634 0.01520433 0.019303614 0.000544345
[12,] 0.084258190 0.05991867 0.319012425 0.227748535
attr(,"x")
[1] "x1"
attr(,"deg")
[1] 2

> 
> ## No test: 
> ## Example 2: Use the function in a formula
> ## This example involves finding a D-optimal design for a functional linear model of n=20 runs
> ## depending on two profile factors. In addition to the main effects, the model includes the
> ## interaction of the profile factors and the quadratic effect of the second profile factor. 
> ## The quadratic effect is identified in the formula argument using the \link[fdesigns]{P} function. 
> 
> example2 <- pflm(formula = ~ x1 + x2 + x1:x2 + P(x2, 2), nsd = 1, mc.cores = 1,
+   npf = 2, tbounds = c(0, 1), nruns = 20, startd=NULL, dx = c(2, 2),
+   knotsx = list(c(0.33, 0.66), c(0.25, 0.50, 0.75)), 
+   pars = c("power", "power", "bspline", "bspline"), db = c(1, 1, 2, 2), 
+   knotsb = list(c(), c(), c(0.25, 0.50, 0.75), c(0.25, 0.50, 0.75)), 
+   criterion = "D", lambda = 1, tol = 0.0001, dlbound = -1, dubound = 1, 
+   progress = FALSE)
Error in pflm(formula = ~x1 + x2 + x1:x2 + P(x2, 2), nsd = 1, mc.cores = 1,  : 
  Criterion should be SE or WSE or SI
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [11s/11s] OK
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/fdesigns.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 1:54.06, 92.97 + 19.69