* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/fastLaplace.Rcheck’
* using R Under development (unstable) (2024-03-16 r86144)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 13.2.1 20231011 (Red Hat 13.2.1-4)
    GNU Fortran (GCC) 13.2.1 20231011 (Red Hat 13.2.1-4)
* running under: Fedora Linux 38 (Workstation Edition)
* using session charset: UTF-8
* checking for file ‘fastLaplace/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘fastLaplace’ version ‘0.0.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘fastLaplace’ can be installed ... [14s/14s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [20s/20s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking examples with --run-donttest ... [120s/121s] ERROR
Running examples in ‘fastLaplace-Ex.R’ failed
The error most likely occurred in:

> ### Name: pred.sglmm
> ### Title: Model Predictions
> ### Aliases: pred.sglmm
> 
> ### ** Examples
> 
> 
> ## the result from fsglmm, data to be predicted, and the coordinates for prediction is required.
> 
> ## No test: 
> result <- fsglmm(Y~-1+X1+X2, kappa=2.5, inits = startinit, data = data,coords = coords,
+ family = "binomial", ntrial = 1, offset = NA,method.optim = "CG",method.integrate = "NR",rank = 50)
Error in model.frame.default(formula, data = data) : 
  'data' must be a data.frame, environment, or list
Calls: fsglmm -> <Anonymous> -> model.frame.default
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [85s/86s]
 [86s/86s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [175s/176s] OK
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/fastLaplace.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 8:12.31, 470.96 + 17.51