* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/epiflows.Rcheck’
* using R Under development (unstable) (2023-03-28 r84103)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2)
    GNU Fortran (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2)
* running under: Fedora 34 (Workstation Edition)
* using session charset: UTF-8
* checking for file ‘epiflows/DESCRIPTION’ ... OK
* this is package ‘epiflows’ version ‘0.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘epiflows’ can be installed ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking startup messages can be suppressed ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘htmlwidgets’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking examples with --run-donttest ... ERROR
Running examples in ‘epiflows-Ex.R’ failed
The error most likely occurred in:

> ### Name: add_coordinates
> ### Title: Add/Retrieve location coordinates
> ### Aliases: add_coordinates get_coordinates get_coordinates.epiflows
> 
> ### ** Examples
> 
> 
> # Setting up the data
> data("Brazil_epiflows")
> data("YF_coordinates")
> get_coordinates(Brazil_epiflows) # no coordinates yet
NULL
> ef <- add_coordinates(Brazil_epiflows, YF_coordinates[-1])
> get_coordinates(ef)
                         id        lon       lat
1            Espirito Santo -40.308863 -19.18342
2              Minas Gerais -44.555031 -18.51218
3            Rio de Janeiro -43.172897 -22.90685
4                 Sao Paulo -46.633309 -23.55052
5          Southeast Brazil -46.209155 -20.33318
6                 Argentina -63.616672 -38.41610
7                     Chile -71.542969 -35.67515
8                   Germany  10.451526  51.16569
9                     Italy  12.567380  41.87194
10                 Paraguay -58.443832 -23.44250
11                 Portugal  -8.224454  39.39987
12                    Spain  -3.749220  40.46367
13           United Kingdom  -3.435973  55.37805
14 United States of America -95.712891  37.09024
15                  Uruguay -55.765835 -32.52278
> get_coordinates(ef, location = "Espirito Santo") # coordinates for Espirito Santo
[1] -40.30886 -19.18342
> ## No test: 
>   # You can use google maps' geocode functionality if you have a decent 
>   # internet connection
>   ef2 <- add_coordinates(Brazil_epiflows, loc_column = "id")
Error in `ggmap::geocode()`:
! Google now requires an API key; see `ggmap::register_google()`.
Backtrace:
    ▆
 1. └─epiflows::add_coordinates(Brazil_epiflows, loc_column = "id")
 2.   └─ggmap::geocode(as.character(the_locations))
 3.     └─cli::cli_abort("Google now requires an API key; see {.fn ggmap::register_google}.")
 4.       └─rlang::abort(...)
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [24s/25s] OK
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/epiflows.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 1:03.62, 55.54 + 7.62