* using log directory ‘/data/localhost/ripley/R/packages/tests-donttest/envar.Rcheck’ * using R Under development (unstable) (2026-08-01 r90334) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2) GNU Fortran (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2) * running under: Fedora Linux 44 (Server Edition) * using session charset: UTF-8 * current time: 2026-08-02 07:56:30 UTC * checking for file ‘envar/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘envar’ version ‘0.1.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘envar’ can be installed ... [11s/11s] OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [16s/16s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking examples with --run-donttest ... [77s/126s] ERROR Running examples in ‘envar-Ex.R’ failed The error most likely occurred in: > ### Name: chelsa > ### Title: Download CHELSA climate data > ### Aliases: chelsa > > ### ** Examples > > ## No test: > > # climatic values for one specific year/month > processed <- par_set(zooregion = "Madagascan") %>% + chelsa(vars=c("tas"), years = 2018, months = 1) ℹ Using CHELSA data. Citation if using standard climatology: Karger D, Conrad O, Böhner J et al (2017). Climatologies at high resolution for the earth’s land surface areas. Scientific Data 4, 170122. DOI: Citation if using the BIOCLIM+ dataset: Brun P, Zimmermann NE, Hari C, Pellissier L, Karger DN (2022). Global climate-related predictors at kilometer resolution for the past and future. Earth System Science Data 14, 5573-5603. DOI: ℹ Download cache is ON: processed source files are stored and reused on re-runs. Set `cache = FALSE` to disable, or call `clear_cache()` to empty it. ℹ Downloading zoogeographic region/realm shapefile ℹ Study area is defined based on the work: Holt BG, Lessard JP, Borregaard MK, et al. (2013). An update of Wallace's zoogeographic regions of the world. Science 339(6115): 74-78. 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|==================================================================== | 97% | |==================================================================== | 98% | |===================================================================== | 98% | |===================================================================== | 99% | |======================================================================| 99% | |======================================================================| 100% ℹ Processing layer "tas_2018_01"... ✔ Processed and added "tas_2018_01" to stack. ✔ All layers processed and stacked successfully > > # climatic values for a long period (real "climate"), if months are not specified > # all the months are downloaded (12 layers per variable) > processed <- par_set(country = "Iceland") %>% + chelsa(vars=c("pr", "tas"), years = "1981-2010", months = 1) ℹ Using CHELSA data. Citation if using standard climatology: Karger D, Conrad O, Böhner J et al (2017). Climatologies at high resolution for the earth’s land surface areas. Scientific Data 4, 170122. DOI: Citation if using the BIOCLIM+ dataset: Brun P, Zimmermann NE, Hari C, Pellissier L, Karger DN (2022). Global climate-related predictors at kilometer resolution for the past and future. Earth System Science Data 14, 5573-5603. DOI: ℹ Download cache is ON: processed source files are stored and reused on re-runs. Set `cache = FALSE` to disable, or call `clear_cache()` to empty it. ℹ Using the Natural Earth database for study area definition. Website: ℹ Starting the download of CHELSA data... ℹ Downloading "pr_1981-2010_01.tif" for "pr_1981-2010_01"... | | | 0% | | | 1% | |= | 1% | |= | 2% | |== | 2% | |== | 3% | |== | 4% | |=== | 4% | |=== | 5% | |==== | 5% | |==== | 6% | |===== | 6% | |===== | 7% | |===== | 8% | |====== | 8% | |====== | 9% | |======= | 9% | |======= | 10% | |======= | 11% | |======== | 11% | |======== | 12% | |========= | 12% | |========= | 13% | |========= | 14% | |========== | 14% | |========== | 15% | |=========== | 15% | |=========== | 16% | |============ | 16% | |============ | 17% | |============ | 18% | |============= | 18% | |============= | 19% | |============== | 19% | |============== | 20% | |============== | 21% | |=============== | 21% | |=============== | 22% | |================ | 22% | |================ | 23% | |================ | 24% | |================= | 24% | |================= | 25% | |================== | 25% | |================== | 26% | |=================== | 26% | 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GDAL Message 1: The definition of geographic CRS EPSG:4326 got from GeoTIFF keys is not the same as the one from the EPSG registry, which may cause issues during reprojection operations. Set GTIFF_SRS_SOURCE configuration option to EPSG to use official parameters (overriding the ones from GeoTIFF keys), or to GEOKEYS to use custom values from GeoTIFF keys and drop the EPSG code. ℹ Processing layer "pr_1981-2010_01"... ✔ Processed and added "pr_1981-2010_01" to stack. ℹ Downloading "tas_1981-2010_01.tif" for "tas_1981-2010_01"... | | | 0% | | | 1% | |= | 1% | |= | 2% | |== | 2% | |== | 3% | |== | 4% | |=== | 4% | |=== | 5% | |==== | 5% | |==== | 6% | |===== | 7% | |===== | 8% | |====== | 8% | |====== | 9% | |======= | 9% | |======= | 10% | |======= | 11% | |======== | 11% | |======== | 12% | |========= | 12% | |========= | 13% | |========== | 14% | |========== | 15% | |=========== | 15% | |=========== | 16% | |============ | 16% | |============ | 17% | |============ | 18% | |============= | 18% | |============= | 19% | |============== | 19% | |============== | 20% | |============== | 21% | |=============== | 21% | |=============== | 22% | |================ | 22% | 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chelsa(vars=c("bio1"), years = "1981-2010", months = 1) ℹ Using CHELSA data. Citation if using standard climatology: Karger D, Conrad O, Böhner J et al (2017). Climatologies at high resolution for the earth’s land surface areas. Scientific Data 4, 170122. DOI: Citation if using the BIOCLIM+ dataset: Brun P, Zimmermann NE, Hari C, Pellissier L, Karger DN (2022). Global climate-related predictors at kilometer resolution for the past and future. Earth System Science Data 14, 5573-5603. DOI: ℹ Download cache is ON: processed source files are stored and reused on re-runs. Set `cache = FALSE` to disable, or call `clear_cache()` to empty it. ℹ Using the Natural Earth database for study area definition. 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|==================================================================== | 97% | |==================================================================== | 98% | |===================================================================== | 98% | |===================================================================== | 99% | |======================================================================| 99% | |======================================================================| 100% ℹ Processing layer "bio1_1981-2010"... ✔ Processed and added "bio1_1981-2010" to stack. ✔ All layers processed and stacked successfully > > # to download a specified set of variables, leave only "bio" and then the > # package will ask which variables to download (all 19 or a selection) in the console > processed <- par_set(country = "Iceland") %>% + chelsa(vars=c("bio"), years = "1981-2010", months = 1) ℹ Using CHELSA data. Citation if using standard climatology: Karger D, Conrad O, Böhner J et al (2017). Climatologies at high resolution for the earth’s land surface areas. Scientific Data 4, 170122. DOI: Citation if using the BIOCLIM+ dataset: Brun P, Zimmermann NE, Hari C, Pellissier L, Karger DN (2022). Global climate-related predictors at kilometer resolution for the past and future. Earth System Science Data 14, 5573-5603. DOI: ℹ Download cache is ON: processed source files are stored and reused on re-runs. Set `cache = FALSE` to disable, or call `clear_cache()` to empty it. ℹ Using the Natural Earth database for study area definition. Website: ℹ Starting the download of CHELSA data... Enter BIO numbers (e.g., 1:19 or 3:5): ℹ Downloading "bio_1981-2010.tif" for "bio_1981-2010"... | | | 0% | |======================================================================| 100% ! Attempt 1/2 failed ℹ Waiting 2s before next attempt... | | | 0% | |======================================================================| 100% ! Attempt 2/2 failed ✖ Download of 'bio_1981-2010.tif' failed after 2 attempts. ! Failed to download "bio_1981-2010" from . Error in `chelsa()`: ! No layers were successfully processed Backtrace: ▆ 1. ├─par_set(country = "Iceland") %>% ... 2. └─envar::chelsa(., vars = c("bio"), years = "1981-2010", months = 1) 3. └─cli::cli_abort("No layers were successfully processed") 4. └─rlang::abort(...) Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [42s/43s] OK * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * checking for new files in some other directories ... NOTE Found the following files/directories: ‘~/.cache/R/envar’ ‘~/.cache/R/envar/grids’ ‘~/.cache/R/envar/grids/aridity index annual.tif’ ‘~/.cache/R/envar/grids/bio1_1981-2010.tif’ ‘~/.cache/R/envar/grids/et0 january.tif’ ‘~/.cache/R/envar/grids/large cities.tif’ ‘~/.cache/R/envar/grids/ports1.tif’ ‘~/.cache/R/envar/grids/pr_1981-2010_01.tif’ ‘~/.cache/R/envar/grids/salinity.nc’ ‘~/.cache/R/envar/grids/tas_1981-2010_01.tif’ ‘~/.cache/R/envar/grids/tas_2018_01.tif’ ‘~/.cache/R/envar/grids/temperature.nc’ * DONE Status: 1 ERROR, 1 NOTE See ‘/data/localhost/ripley/R/packages/tests-donttest/envar.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 4:01.56, 166.18 + 25.10