* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/diseasystore.Rcheck’
* using R Under development (unstable) (2026-03-14 r89622)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* current time: 2026-03-15 00:15:14 UTC
* checking for file ‘diseasystore/DESCRIPTION’ ... OK
* this is package ‘diseasystore’ version ‘0.3.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘diseasystore’ can be installed ... [13s/13s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking examples with --run-donttest ... [18s/16s] ERROR
Running examples in ‘diseasystore-Ex.R’ failed
The error most likely occurred in:

> ### Name: test_diseasystore
> ### Title: Test a given diseasy store
> ### Aliases: test_diseasystore
> 
> ### ** Examples
> 
> ## Don't show: 
> if (requireNamespace("duckdb", quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## No test: 
+   # Generator for connections
+   conns <- \(skip_backends) list(DBI::dbConnect(duckdb::duckdb()))
+ 
+   # Call the testing suite
+   test_diseasystore(
+     diseasystore_generator = DiseasystoreSimulist,
+     conn_generator = conns,
+     target_schema = "test",
+     test_start_date = as.Date("2020-02-20"),
+     skip_backends = "SQLiteConnection"
+   )
+ ## End(No test)
+ ## Don't show: 
+ }) # examplesIf
> conns <- function(skip_backends) list(DBI::dbConnect(duckdb::duckdb()))
> test_diseasystore(diseasystore_generator = DiseasystoreSimulist, conn_generator = conns, 
+     target_schema = "test", test_start_date = as.Date("2020-02-20"), skip_backends = "SQLiteConnection")
── Skip: DiseasystoreSimulist initialises correctly ────────────────────────────
Reason: "SQLiteConnection" %in% skip_backends is TRUE
── Skip: DiseasystoreSimulist can initialise with remote source_conn ───────────
Reason: "SQLiteConnection" %in% skip_backends is TRUE
── Skip: DiseasystoreSimulist can initialise with default source_conn ──────────
Reason: "SQLiteConnection" %in% skip_backends is TRUE
── Skip: Skipped test connection are also disallowed in DiseasystoreSimulist constructor  ──
Reason: empty test
── Error: DiseasystoreSimulist can retrieve features from a fresh state ────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ..., .progress = .progress)`: ℹ In index: 2.
Caused by error:
! Expected `purrr::pluck(validity_period_data_types, "valid_from")` to be identical to `DBI::dbDataType(dbObj = conn, obj = as.Date(0))`.
Differences:
1/1 mismatches
x[1]: "TIMESTAMP"
y[1]: "DATE"
Feature `age` has a non-Date `valid_from` column.
Error:
! Test failed with 1 failure and 8 successes.
Backtrace:
     ▆
  1. ├─base::withAutoprint(...)
  2. │ └─base::source(...)
  3. │   ├─base::withVisible(eval(ei, envir))
  4. │   └─base::eval(ei, envir)
  5. │     └─base::eval(ei, envir)
  6. └─diseasystore::test_diseasystore(...)
  7.   └─testthat::test_that(...)
  8.     └─testthat:::test_code(code, parent.frame())
  9.       ├─withr (local) `<fn>`()
 10.       └─reporter$end_test(context = reporter$.context, test = test)
 11.         └─cli::cli_abort(...)
 12.           └─rlang::abort(...)
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘spelling.R’
  Running ‘testthat.R’ [276s/276s]
 [276s/277s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [87s/84s] OK
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/diseasystore.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 7:38.23, 422.86 + 37.37