* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/depCensoring.Rcheck’
* using R Under development (unstable) (2025-11-16 r89026)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* checking for file ‘depCensoring/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘depCensoring’ version ‘0.1.8’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘depCensoring’ can be installed ... [31s/32s] OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [62s/63s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking examples with --run-donttest ... [30m/31m] ERROR
Running examples in ‘depCensoring-Ex.R’ failed
The error most likely occurred in:

> ### Name: pi.surv
> ### Title: Estimate the model of Willems et al. (2025).
> ### Aliases: pi.surv
> 
> ### ** Examples
> 
> ## No test: 
> 
>   # Clear workspace
>   rm(list = ls())
> 
>   # Load the survival package
>   library(survival)
> 
>   # Set random seed
>   set.seed(123)
> 
>   # Load and preprocess data
>   data <- survival::lung
>   data[, "intercept"] <- rep(1, nrow(data))
>   data[, "status"] <- data[, "status"] - 1
>   data <- data[, c("time", "status", "intercept", "age", "sex")]
>   colnames(data) <- c("Y", "Delta", "X0", "X1", "X2")
> 
>   # Standardize age variable
>   data[, "X1"] <- scale(data[, "X1"])
> 
>   ## Example:
>   ## - Link function: AFT link function (default setting)
>   ## - Number of IF: 5 IF per continuous covariate (default setting)
>   ## - Search method: Binary search
>   ## - Type of IF: Cubic spline functions for continuous covariate, indicator
>   ##   function for discrete covariate (default setting).
> 
>   # Settings for main estimation function
>   idx.param.of.interest <- 2 # Interest in effect of age
>   idxs.c <- 1                # X1 (age) is continuous
>   t <- 200                   # Model imposed at t = 200
>   search.method <- "GS"      # Use binary search
>   par.space <- matrix(rep(c(-10, 10), 3), nrow = 3, byrow = TRUE)
>   add.options <- list()
>   picturose <- TRUE
>   parallel <- FALSE
> 
>   # Estimate the identified intervals
>   pi.surv(data, idx.param.of.interest, idxs.c, t, par.space,
+           search.method = search.method, add.options = add.options,
+           picturose = picturose, parallel = parallel)
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [160s/167s]
 [160s/167s] OK
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/depCensoring.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 36:58.62, 2120.52 + 31.30