* using log directory ‘/data/localhost/ripley/R/packages/tests-donttest/deepspat.Rcheck’
* using R Under development (unstable) (2026-07-23 r90290)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)
    GNU Fortran (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)
* running under: Fedora Linux 44 (Server Edition)
* using session charset: UTF-8
* current time: 2026-07-23 11:31:39 UTC
* checking for file ‘deepspat/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘deepspat’ version ‘0.3.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘deepspat’ can be installed ... [15s/19s] OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [30s/41s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking examples with --run-donttest ... [33s/88s] ERROR
Running examples in ‘deepspat-Ex.R’ failed
The error most likely occurred in:

> ### Name: deepspat_GP
> ### Title: Deep compositional spatial model for Gaussian processes
> ### Aliases: deepspat_GP
> 
> ### ** Examples
> 
> ## No test: 
> if (reticulate::py_module_available("tensorflow")) {
+ df <- data.frame(s1 = rnorm(100), s2 = rnorm(100), z = rnorm(100))
+ layers <- c(AWU(r = 50L, dim = 1L, grad = 200, lims = c(-0.5, 0.5)),
+             AWU(r = 50L, dim = 2L, grad = 200, lims = c(-0.5, 0.5)))
+ d <- deepspat_GP(f = z ~ s1 + s2 - 1,
+                  data = df, g = ~ 1,
+                  layers = layers, method = "REML",
+                  family = "matern_nonstat",
+                  nsteps = 10L)
+  }
Learning weight parameters...
Error in py_module_import(module, convert = convert) : 
  ModuleNotFoundError: No module named 'scipy'
Run `reticulate::py_last_error()` for details.
Calls: deepspat_GP ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/localhost/ripley/R/packages/tests-donttest/deepspat.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 3:45.16, 120.96 + 17.92