* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/dafishr.Rcheck’ * using R Under development (unstable) (2025-09-19 r88859) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) * running under: Fedora Linux 40 (Workstation Edition) * using session charset: UTF-8 * checking for file ‘dafishr/DESCRIPTION’ ... OK * this is package ‘dafishr’ version ‘1.0.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘dafishr’ can be installed ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Missing dependency on R >= 4.1.0 because package code uses the pipe |> or function shorthand \(...) syntax added in R 4.1.0. File(s) using such syntax: ‘clean_land_points.R’ ‘join_mpa_data.R’ ‘join_mpa_data.Rd’ ‘join_ports_locations.R’ ‘model_vms.R’ ‘vms_clean.R’ * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [12s/12s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [16s/17s] OK * checking examples with --run-donttest ... [52s/189s] ERROR Running examples in ‘dafishr-Ex.R’ failed The error most likely occurred in: > ### Name: vms_download > ### Title: Download Vessel Monitoring System, VMS, raw data > ### Aliases: vms_download > > ### ** Examples > > > # Download single year > # in Ubuntu it draws a certificate error when downloading, testing in windows and MacOS > # does not draw that error and you can use default certificate checking. > ## No test: > vms_download(2019, destination.folder = tempdir(), check.url.certificate = FALSE) Failed to connect (hostname='nube.conapesca.gob.mx', errno=110) Failed to connect: Connect error Error in utils::download.file(url, destfile = stringr::str_replace_all(paste0(destination.folder, : 'wget' call had nonzero exit status Calls: vms_download -> Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [14s/14s] OK * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * checking for new files in some other directories ... OK * DONE Status: 1 ERROR, 1 NOTE See ‘/data/blackswan/ripley/R/packages/tests-devel/dafishr.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 7:24.75, 191.89 + 107.84