* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/cosmic.Rcheck’
* using R Under development (unstable) (2026-05-05 r90001)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* current time: 2026-05-05 12:11:02 UTC
* checking for file ‘cosmic/DESCRIPTION’ ... OK
* this is package ‘cosmic’ version ‘0.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... INFO
Package suggested but not available for checking: ‘cmdstanr’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘cosmic’ can be installed ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking examples with --run-donttest ... ERROR
Running examples in ‘cosmic-Ex.R’ failed
The error most likely occurred in:

> ### Name: cosmic
> ### Title: Fit the Conditional Ordinal Stereotype Model (COSMIC)
> ### Aliases: cosmic
> 
> ### ** Examples
> 
> ## No test: 
> d <- data.frame(
+   id = c(1,1,2,2),
+   idOff = c(1,2,1,2),
+   y = c(1,2,1,3)
+ )
> 
> fit <- cosmic(d, id, idOff, y,
+               iter = 300,
+               chains = 1,
+               cores = 1,
+               threads = 1)
Error: The 'cmdstanr' package is required to fit COSMIC models. Install it with install.packages('cmdstanr', repos = c('https://stan-dev.r-universe.dev', getOption('repos'))).
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [12s/12s] OK
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... NOTE
Found the following files/directories:
  ‘~/.cache/R/saber/briefs/ctx_test_244031.md’
  ‘~/.cache/R/saber/briefs/proj_3b93f4c2c5b77.md’
  ‘~/.cache/R/saber/symbols/proj_3b93f4c2c5b77.rds’
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/cosmic.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 0:55.62, 36.10 + 19.26