* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/corpustools.Rcheck’
* using R Under development (unstable) (2025-12-20 r89211)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* checking for file ‘corpustools/DESCRIPTION’ ... OK
* this is package ‘corpustools’ version ‘0.5.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘corpustools’ can be installed ... [60s/57s] OK
* used C++ compiler: ‘g++ (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [20s/20s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘corpustools-Ex.R’ failed
The error most likely occurred in:

> ### Name: export_span_annotations
> ### Title: Export span annotations
> ### Aliases: export_span_annotations
> 
> ### ** Examples
> 
> tc = create_tcorpus(sotu_texts, c('president','text'), doc_column='id', remember_spaces=TRUE)
Error in `[.data.table`(tokens, , `:=`(start, 1 + c(0, head(cumsum(len),  : 
  attempt access index 5/5 in VECTOR_ELT
Calls: create_tcorpus ... create_tcorpus.character -> tokenize_to_dataframe -> [ -> [.data.table
Execution halted
* checking examples with --run-donttest ... ERROR
Running examples in ‘corpustools-Ex.R’ failed
The error most likely occurred in:

> ### Name: agg_tcorpus
> ### Title: Aggregate the tokens data
> ### Aliases: agg_tcorpus
> 
> ### ** Examples
> 
> ## No test: 
> tc = create_tcorpus(sotu_texts, doc_col='id')
> 
> library(quanteda)
Package version: 4.3.1
Unicode version: 15.1
ICU version: 74.2
Parallel computing: 2 of 32 threads used.
See https://quanteda.io for tutorials and examples.
> dict = data_dictionary_LSD2015
> dict = melt_quanteda_dict(dict)
> dict$sentiment = ifelse(dict$code %in% c('positive','neg_negative'), 1, -1)
> tc$code_dictionary(dict)
Error in `[.data.table`(ql, , `:=`(n, add_n(t)), by = "i") : 
  attempt access index 2/2 in VECTOR_ELT
Calls: <Anonymous> ... collapse_dict -> expand_wildcards -> [ -> [.data.table
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.r’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [17s/17s] ERROR
Error(s) in re-building vignettes:
  ...
--- re-building ‘corpustools.Rmd’ using rmarkdown

Quitting from corpustools.Rmd:394-396 [unnamed-chunk-31]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 2/2 in VECTOR_ELT
---
Backtrace:
    ▆
 1. └─corpustools::search_features(tc, query = c("terror*", "war*"))
 2.   └─corpustools:::get_dict_results(...)
 3.     └─corpustools:::dictionary_lookup(...)
 4.       └─corpustools:::dictionary_lookup_tokens(...)
 5.         └─corpustools:::dictionary_lookup_tokens2(...)
 6.           └─corpustools:::collapse_dict(...)
 7.             └─corpustools:::expand_wildcards(sn, feature_levels)
 8.               ├─ql[, `:=`(n, add_n(t)), by = "i"]
 9.               └─data.table:::`[.data.table`(ql, , `:=`(n, add_n(t)), by = "i")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'corpustools.Rmd' failed with diagnostics:
attempt access index 2/2 in VECTOR_ELT
--- failed re-building ‘corpustools.Rmd’

SUMMARY: processing the following file failed:
  ‘corpustools.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 3 ERRORs
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/corpustools.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 2:44.28, 142.95 + 22.96