* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/conversim.Rcheck’
* using R Under development (unstable) (2025-12-20 r89211)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* checking for file ‘conversim/DESCRIPTION’ ... OK
* this is package ‘conversim’ version ‘0.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘conversim’ can be installed ... [10s/11s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [15s/15s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘conversim-Ex.R’ failed
The error most likely occurred in:

> ### Name: sent_sim_seq
> ### Title: Calculate sentiment similarity sequence for a single dyad
> ### Aliases: sent_sim_seq
> 
> ### ** Examples
> 
> conversation <- data.frame(
+   processed_text = c("I love this movie!", "It's really amazing.",
+                      "The acting is superb.", "I couldn't agree more.")
+ )
> result <- sent_sim_seq(conversation, window_size = 2)
Error in `[.data.table`(dat, , `:=`(indx, wc < 1), by = c("id", "sentences",  : 
  attempt access index 3/3 in VECTOR_ELT
Calls: sent_sim_seq ... similarity_func -> sentiment_by -> sentiment_by.character
Execution halted
* checking examples with --run-donttest ... ERROR
Running examples in ‘conversim-Ex.R’ failed
The error most likely occurred in:

> ### Name: gen_sim_report
> ### Title: Generate similarity report
> ### Aliases: gen_sim_report
> 
> ### ** Examples
> 
> ## No test: 
> speech1 <- "This is the first speech. It talks about important topics."
> speech2 <- "This is the second speech. It covers similar subjects."
> report <- gen_sim_report(speech1, speech2)
Error in `[.data.table`(dat, , `:=`(indx, wc < 1), by = c("id", "sentences",  : 
  attempt access index 3/3 in VECTOR_ELT
Calls: gen_sim_report ... sentiment_similarity -> sentiment_by -> sentiment_by.character
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(conversim)
  > 
  > test_check("conversim")
  boundary (singular) fit: see help('isSingular')
  Saving _problems/test-conversation_multidyads-77.R
  Loading required package: NLP
  
  Attaching package: 'NLP'
  
  The following object is masked from 'package:ggplot2':
  
      annotate
  
  Saving _problems/test-conversation_sequence-73.R
  Loading required package: SnowballC
  Saving _problems/test-main_functions-81.R
  Saving _problems/test-main_functions_utilities-36.R
  Saving _problems/test-main_functions_utilities-54.R
  Saving _problems/test-main_functions_utilities-70.R
  [ FAIL 6 | WARN 11 | SKIP 0 | PASS 141 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-conversation_multidyads.R:77:3'): sentiment_sim_dyads works correctly ──
  Error in ``[.data.table`(dat, , `:=`(indx, wc < 1), by = c("id", "sentences", "wc"))`: attempt access index 3/3 in VECTOR_ELT
  Backtrace:
       ▆
    1. └─conversim::sentiment_sim_dyads(preprocessed, window_size = 2) at test-conversation_multidyads.R:77:3
    2.   └─conversim::sentiment_similarity(window1, window2)
    3.     ├─sentimentr::sentiment_by(conv1)
    4.     └─sentimentr:::sentiment_by.character(conv1)
    5.       ├─base::suppressWarnings(sentiment(text.var = text.var, ...))
    6.       │ └─base::withCallingHandlers(...)
    7.       ├─sentimentr::sentiment(text.var = text.var, ...)
    8.       └─sentimentr:::sentiment.character(text.var = text.var, ...)
    9.         ├─sentimentr::sentiment(...)
   10.         └─sentimentr:::sentiment.get_sentences_character(...)
   11.           └─sentimentr:::make_sentence_df2(sents, retention_regex = retention_regex)
   12.             ├─dat[, `:=`(indx, wc < 1), by = c("id", "sentences", "wc")]
   13.             └─data.table:::`[.data.table`(...)
  ── Error ('test-conversation_sequence.R:73:3'): sent_sim_seq works correctly ───
  Error in ``[.data.table`(dat, , `:=`(indx, wc < 1), by = c("id", "sentences", "wc"))`: attempt access index 3/3 in VECTOR_ELT
  Backtrace:
       ▆
    1. └─conversim::sent_sim_seq(sample_conversation, window_size = 3) at test-conversation_sequence.R:73:3
    2.   └─conversim::calc_sim_seq(conversation, window_size, conversim::sentiment_similarity)
    3.     └─conversim (local) similarity_func(window1, window2)
    4.       ├─sentimentr::sentiment_by(conv1)
    5.       └─sentimentr:::sentiment_by.character(conv1)
    6.         ├─base::suppressWarnings(sentiment(text.var = text.var, ...))
    7.         │ └─base::withCallingHandlers(...)
    8.         ├─sentimentr::sentiment(text.var = text.var, ...)
    9.         └─sentimentr:::sentiment.character(text.var = text.var, ...)
   10.           ├─sentimentr::sentiment(...)
   11.           └─sentimentr:::sentiment.get_sentences_character(...)
   12.             └─sentimentr:::make_sentence_df2(sents, retention_regex = retention_regex)
   13.               ├─dat[, `:=`(indx, wc < 1), by = c("id", "sentences", "wc")]
   14.               └─data.table:::`[.data.table`(...)
  ── Error ('test-main_functions.R:81:3'): sentiment_similarity works correctly ──
  Error in ``[.data.table`(dat, , `:=`(indx, wc < 1), by = c("id", "sentences", "wc"))`: attempt access index 3/3 in VECTOR_ELT
  Backtrace:
       ▆
    1. └─conversim::sentiment_similarity(conv1, conv2) at test-main_functions.R:81:3
    2.   ├─sentimentr::sentiment_by(conv1)
    3.   └─sentimentr:::sentiment_by.character(conv1)
    4.     ├─base::suppressWarnings(sentiment(text.var = text.var, ...))
    5.     │ └─base::withCallingHandlers(...)
    6.     ├─sentimentr::sentiment(text.var = text.var, ...)
    7.     └─sentimentr:::sentiment.character(text.var = text.var, ...)
    8.       ├─sentimentr::sentiment(...)
    9.       └─sentimentr:::sentiment.get_sentences_character(...)
   10.         └─sentimentr:::make_sentence_df2(sents, retention_regex = retention_regex)
   11.           ├─dat[, `:=`(indx, wc < 1), by = c("id", "sentences", "wc")]
   12.           └─data.table:::`[.data.table`(...)
  ── Error ('test-main_functions_utilities.R:36:3'): gen_sim_report generates a valid report ──
  Error in ``[.data.table`(dat, , `:=`(indx, wc < 1), by = c("id", "sentences", "wc"))`: attempt access index 3/3 in VECTOR_ELT
  Backtrace:
       ▆
    1. └─conversim::gen_sim_report(speech1, speech2) at test-main_functions_utilities.R:36:3
    2.   └─conversim::sentiment_similarity(speech1, speech2)
    3.     ├─sentimentr::sentiment_by(conv1)
    4.     └─sentimentr:::sentiment_by.character(conv1)
    5.       ├─base::suppressWarnings(sentiment(text.var = text.var, ...))
    6.       │ └─base::withCallingHandlers(...)
    7.       ├─sentimentr::sentiment(text.var = text.var, ...)
    8.       └─sentimentr:::sentiment.character(text.var = text.var, ...)
    9.         ├─sentimentr::sentiment(...)
   10.         └─sentimentr:::sentiment.get_sentences_character(...)
   11.           └─sentimentr:::make_sentence_df2(sents, retention_regex = retention_regex)
   12.             ├─dat[, `:=`(indx, wc < 1), by = c("id", "sentences", "wc")]
   13.             └─data.table:::`[.data.table`(...)
  ── Error ('test-main_functions_utilities.R:54:3'): print_sim_report works without errors ──
  Error in ``[.data.table`(dat, , `:=`(indx, wc < 1), by = c("id", "sentences", "wc"))`: attempt access index 3/3 in VECTOR_ELT
  Backtrace:
       ▆
    1. └─conversim::gen_sim_report(speech1, speech2) at test-main_functions_utilities.R:54:3
    2.   └─conversim::sentiment_similarity(speech1, speech2)
    3.     ├─sentimentr::sentiment_by(conv1)
    4.     └─sentimentr:::sentiment_by.character(conv1)
    5.       ├─base::suppressWarnings(sentiment(text.var = text.var, ...))
    6.       │ └─base::withCallingHandlers(...)
    7.       ├─sentimentr::sentiment(text.var = text.var, ...)
    8.       └─sentimentr:::sentiment.character(text.var = text.var, ...)
    9.         ├─sentimentr::sentiment(...)
   10.         └─sentimentr:::sentiment.get_sentences_character(...)
   11.           └─sentimentr:::make_sentence_df2(sents, retention_regex = retention_regex)
   12.             ├─dat[, `:=`(indx, wc < 1), by = c("id", "sentences", "wc")]
   13.             └─data.table:::`[.data.table`(...)
  ── Error ('test-main_functions_utilities.R:70:3'): print_sim_report prints all similarity scores ──
  Error in ``[.data.table`(dat, , `:=`(indx, wc < 1), by = c("id", "sentences", "wc"))`: attempt access index 3/3 in VECTOR_ELT
  Backtrace:
       ▆
    1. └─conversim::gen_sim_report(speech1, speech2) at test-main_functions_utilities.R:70:3
    2.   └─conversim::sentiment_similarity(speech1, speech2)
    3.     ├─sentimentr::sentiment_by(conv1)
    4.     └─sentimentr:::sentiment_by.character(conv1)
    5.       ├─base::suppressWarnings(sentiment(text.var = text.var, ...))
    6.       │ └─base::withCallingHandlers(...)
    7.       ├─sentimentr::sentiment(text.var = text.var, ...)
    8.       └─sentimentr:::sentiment.character(text.var = text.var, ...)
    9.         ├─sentimentr::sentiment(...)
   10.         └─sentimentr:::sentiment.get_sentences_character(...)
   11.           └─sentimentr:::make_sentence_df2(sents, retention_regex = retention_regex)
   12.             ├─dat[, `:=`(indx, wc < 1), by = c("id", "sentences", "wc")]
   13.             └─data.table:::`[.data.table`(...)
  
  [ FAIL 6 | WARN 11 | SKIP 0 | PASS 141 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [34s/35s] ERROR
Error(s) in re-building vignettes:
  ...
--- re-building ‘Analyzing_Similarities_between_Two_Long_Speeches.Rmd’ using rmarkdown

Quitting from Analyzing_Similarities_between_Two_Long_Speeches.Rmd:339-343 [unnamed-chunk-14]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 3/3 in VECTOR_ELT
---
Backtrace:
     ▆
  1. └─global sentiment_similarity(speeches_data$text[1], speeches_data$text[2])
  2.   ├─sentimentr::sentiment_by(conv1)
  3.   └─sentimentr:::sentiment_by.character(conv1)
  4.     ├─base::suppressWarnings(sentiment(text.var = text.var, ...))
  5.     │ └─base::withCallingHandlers(...)
  6.     ├─sentimentr::sentiment(text.var = text.var, ...)
  7.     └─sentimentr:::sentiment.character(text.var = text.var, ...)
  8.       ├─sentimentr::sentiment(...)
  9.       └─sentimentr:::sentiment.get_sentences_character(...)
 10.         └─sentimentr:::make_sentence_df2(sents, retention_regex = retention_regex)
 11.           ├─dat[, `:=`(indx, wc < 1), by = c("id", "sentences", "wc")]
 12.           └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Analyzing_Similarities_between_Two_Long_Speeches.Rmd' failed with diagnostics:
attempt access index 3/3 in VECTOR_ELT
--- failed re-building ‘Analyzing_Similarities_between_Two_Long_Speeches.Rmd’

--- re-building ‘Analyzing_Similarities_in_Conversational_Sequence_in_One_Dyad.Rmd’ using rmarkdown

Quitting from Analyzing_Similarities_in_Conversational_Sequence_in_One_Dyad.Rmd:378-391 [sentiment_similarity]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 3/3 in VECTOR_ELT
---
Backtrace:
     ▆
  1. └─global sent_sim_seq(conversation, window_size = 3)
  2.   └─global calc_sim_seq(conversation, window_size, conversim::sentiment_similarity)
  3.     └─conversim (local) similarity_func(window1, window2)
  4.       ├─sentimentr::sentiment_by(conv1)
  5.       └─sentimentr:::sentiment_by.character(conv1)
  6.         ├─base::suppressWarnings(sentiment(text.var = text.var, ...))
  7.         │ └─base::withCallingHandlers(...)
  8.         ├─sentimentr::sentiment(text.var = text.var, ...)
  9.         └─sentimentr:::sentiment.character(text.var = text.var, ...)
 10.           ├─sentimentr::sentiment(...)
 11.           └─sentimentr:::sentiment.get_sentences_character(...)
 12.             └─sentimentr:::make_sentence_df2(sents, retention_regex = retention_regex)
 13.               ├─dat[, `:=`(indx, wc < 1), by = c("id", "sentences", "wc")]
 14.               └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Analyzing_Similarities_in_Conversational_Sequence_in_One_Dyad.Rmd' failed with diagnostics:
attempt access index 3/3 in VECTOR_ELT
--- failed re-building ‘Analyzing_Similarities_in_Conversational_Sequence_in_One_Dyad.Rmd’

--- re-building ‘Analyzing_Similarities_in_Conversational_Sequences_across_Multiple_Dyads.Rmd’ using rmarkdown

Quitting from Analyzing_Similarities_in_Conversational_Sequences_across_Multiple_Dyads.Rmd:466-468 [sentiment_similarity]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 3/3 in VECTOR_ELT
---
Backtrace:
     ▆
  1. └─global sentiment_sim_dyads(processed_convs, window_size = 3)
  2.   └─conversim::sentiment_similarity(window1, window2)
  3.     ├─sentimentr::sentiment_by(conv1)
  4.     └─sentimentr:::sentiment_by.character(conv1)
  5.       ├─base::suppressWarnings(sentiment(text.var = text.var, ...))
  6.       │ └─base::withCallingHandlers(...)
  7.       ├─sentimentr::sentiment(text.var = text.var, ...)
  8.       └─sentimentr:::sentiment.character(text.var = text.var, ...)
  9.         ├─sentimentr::sentiment(...)
 10.         └─sentimentr:::sentiment.get_sentences_character(...)
 11.           └─sentimentr:::make_sentence_df2(sents, retention_regex = retention_regex)
 12.             ├─dat[, `:=`(indx, wc < 1), by = c("id", "sentences", "wc")]
 13.             └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Analyzing_Similarities_in_Conversational_Sequences_across_Multiple_Dyads.Rmd' failed with diagnostics:
attempt access index 3/3 in VECTOR_ELT
--- failed re-building ‘Analyzing_Similarities_in_Conversational_Sequences_across_Multiple_Dyads.Rmd’

--- re-building ‘utilities_functions.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘utilities_functions.Rmd’

SUMMARY: processing the following files failed:
  ‘Analyzing_Similarities_between_Two_Long_Speeches.Rmd’
  ‘Analyzing_Similarities_in_Conversational_Sequence_in_One_Dyad.Rmd’
  ‘Analyzing_Similarities_in_Conversational_Sequences_across_Multiple_Dyads.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 4 ERRORs
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/conversim.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 2:28.87, 125.95 + 21.94