* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/convergenceDFM.Rcheck’
* using R Under development (unstable) (2025-12-01 r89083)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* checking for file ‘convergenceDFM/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘convergenceDFM’ version ‘0.1.4’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... INFO
Package suggested but not available for checking: ‘cmdstanr’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘convergenceDFM’ can be installed ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [11s/11s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking examples with --run-donttest ... [141s/141s] ERROR
Running examples in ‘convergenceDFM-Ex.R’ failed
The error most likely occurred in:

> ### Name: estimate_factor_OU
> ### Title: Estimate Factor Ornstein-Uhlenbeck model (Stan if available)
> ### Aliases: estimate_factor_OU
> 
> ### ** Examples
> 
> ## No test: 
>   # Create toy factor data
>   set.seed(123)
>   n <- 50
>   X_scores <- matrix(rnorm(n * 2), n, 2)
>   Y_scores <- matrix(rnorm(n * 2), n, 2)
>   factors_data <- list(scores_X = X_scores, scores_Y = Y_scores)
>   
>   # Estimate OU model (reduce iterations for speed)
>   ou_result <- estimate_factor_OU(factors_data, chains = 2, iter = 500, 
+                                    verbose = FALSE)
Error in config_argss(chains = chains, iter = iter, warmup = warmup, thin = thin,  : 
  parameter 'warmup' should be an integer less than 'iter'
error in specifying arguments; sampling not done
Error in config_argss(chains = chains, iter = iter, warmup = warmup, thin = thin,  : 
  parameter 'warmup' should be an integer less than 'iter'
error in specifying arguments; sampling not done
Warning in .local(object, ...) :
  some chains had errors; consider specifying chains = 1 to debug
here are whatever error messages were returned
[[1]]
Stan model 'anon_model' does not contain samples.

[[2]]
Stan model 'anon_model' does not contain samples.

Stan model 'anon_model' does not contain samples.
Stan model 'anon_model' does not contain samples.
Stan model 'anon_model' does not contain samples.
Stan model 'anon_model' does not contain samples.
Stan model 'anon_model' does not contain samples.
Error in beta_med[l, k] <- rstan::summary(res$fit, pars = nm)$summary[,  : 
  number of items to replace is not a multiple of replacement length
Calls: estimate_factor_OU
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/convergenceDFM.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 3:26.03, 180.94 + 25.26