* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/clickb.Rcheck’
* using R Under development (unstable) (2025-12-20 r89211)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* checking for file ‘clickb/DESCRIPTION’ ... OK
* this is package ‘clickb’ version ‘0.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘clickb’ can be installed ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking examples with --run-donttest ... ERROR
Running examples in ‘clickb-Ex.R’ failed
The error most likely occurred in:

> ### Name: fit_mixmar
> ### Title: Bayesian estimation for mixture of Markov models with fixed
> ###   number of components
> ### Aliases: fit_mixmar
> 
> ### ** Examples
> 
> ## No test: 
> #Compare model-based clustering with respect to another classification
> 
> # Set up initial values and hyper parameters (either fixed or random)
> 
> iter<-5   # number of iterations for the Gibbs sampler
> burn<-0
> 
> num.cluster <- 3 # number of components
> states <- 5 # number of states
> 
> ini.constr<-c(1, 0, 1, 1, 1)           # constrains on initial probabilities               
> trans.constr<-matrix(c(1, 1, 1, 0, 1,  # constrains on transition probabilities                   
+              1, 0, 1, 1, 1,                                  
+              1, 1, 1, 1, 0,                                 
+              0, 1, 1, 1, 1,                                 
+              1, 1, 0, 1, 1),byrow=TRUE,nrow=5) 
> 
> # parameters initial values
> A.ini <- 1/states*matrix(rep(1, length = (states^2)), 
+                          nrow = states, byrow = TRUE, 
+                          dimnames = list(as.character(c(1:states))) )
> pi.ini <- rep(1/states, length = states)
> 
> # Prior distributions' hyperparameters
> prior.ini<- prior.transrow <- prior.mixcoef <- 1  
> 
> # data is the simulated sequential dataset obtained in the sim_seq() example
> 
> # Run the MCMC to estimate parameters 
> MMM_1 <- fit_mixmar(data, iter, burn, num.cluster = num.cluster, states = states,
+                      A.ini = A.ini, pi.ini = pi.ini, prior.ini = prior.ini, 
+                      prior.transrow = prior.transrow, prior.mixcoef = prior.mixcoef, 
+                      ini.constr = ini.constr, trans.constr = trans.constr)
Warning in is.na(data) :
  is.na() applied to non-(list or vector) of type 'closure'
Error in data$id : object of type 'closure' is not subsettable
Calls: fit_mixmar -> splitdatalist -> order
Execution halted
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/clickb.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 0:36.35, 23.02 + 14.12