* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/circularEV.Rcheck’ * using R Under development (unstable) (2024-03-16 r86144) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 13.2.1 20231011 (Red Hat 13.2.1-4) GNU Fortran (GCC) 13.2.1 20231011 (Red Hat 13.2.1-4) * running under: Fedora Linux 38 (Workstation Edition) * using session charset: UTF-8 * checking for file ‘circularEV/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘circularEV’ version ‘0.1.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘circularEV’ can be installed ... [15s/15s] OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [25s/25s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking examples with --run-donttest ... [68s/180s] ERROR Running examples in ‘circularEV-Ex.R’ failed The error most likely occurred in: > ### Name: ThrSelection > ### Title: Threshold selection > ### Aliases: ThrSelection > > ### ** Examples > > data(HsSP) > data(drc) > timeRange <- 54.5 > > idx <- order(drc) > drc <- drc[idx] > Data <- HsSP[idx] > set.seed(1234) > Data <- Data + runif(length(Data), -1e-4, 1e-4) > > thetaVec <- 1:360 > > ## No test: > > thrResultMom <- ThrSelection(Data=Data, drc=drc, h=60, b=0.35, thetaGrid=thetaVec, + EVIestimator="Mom", useKernel=T, concent=10, bw=30, + numCores=2)$thr 2 CPU cores will be used starting worker pid=304618 on localhost:11477 at 21:07:43.372 starting worker pid=304617 on localhost:11477 at 21:07:43.377 | | | 0%Error in exists(sym, env, mode = "function", inherits = FALSE) : T used instead of TRUE Calls: ThrSelection ... getexports -> expandsyms -> gather -> lapply -> FUN -> exists Execution halted Error in unserialize(node$con) : error reading from connection Calls: ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Execution halted Error in unserialize(node$con) : error reading from connection Calls: ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [90s/204s] OK * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * checking for new files in some other directories ... OK * DONE Status: 1 ERROR See ‘/data/blackswan/ripley/R/packages/tests-devel/circularEV.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 8:23.24, 239.36 + 36.61