* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/cfma.Rcheck’ * using R Under development (unstable) (2024-03-16 r86144) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 13.2.1 20231011 (Red Hat 13.2.1-4) GNU Fortran (GCC) 13.2.1 20231011 (Red Hat 13.2.1-4) * running under: Fedora Linux 38 (Workstation Edition) * using session charset: UTF-8 * checking for file ‘cfma/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘cfma’ version ‘1.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘cfma’ can be installed ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) FMA.concurrent.CV.Rd:47: Lost braces 47 | \code{coefficient}{: the estimated coefficient with respect to the basis function} | ^ checkRd: (-1) FMA.concurrent.CV.Rd:49: Lost braces 49 | \code{curve}{: the estimated coefficient curve} | ^ checkRd: (-1) FMA.concurrent.CV.Rd:51: Lost braces 51 | \code{fitted}{: the fitted value of \code{M}} | ^ checkRd: (-1) FMA.concurrent.CV.Rd:53: Lost braces 53 | \code{lambda}{: the chosen \eqn{\lambda} value} | ^ checkRd: (-1) FMA.concurrent.CV.Rd:57: Lost braces 57 | \code{coefficient}{: the estimated coefficient with respect to the basis function} | ^ checkRd: (-1) FMA.concurrent.CV.Rd:59: Lost braces 59 | \code{curve}{: the estimated coefficient curve} | ^ checkRd: (-1) FMA.concurrent.CV.Rd:61: Lost braces 61 | \code{fitted}{: the fitted value of \code{Y}} | ^ checkRd: (-1) FMA.concurrent.CV.Rd:63: Lost braces 63 | \code{lambda}{: the chosen \eqn{\lambda} value} | ^ checkRd: (-1) FMA.concurrent.CV.Rd:67: Lost braces 67 | \code{coefficients}{: the coefficient with respect to the basis function} | ^ checkRd: (-1) FMA.concurrent.CV.Rd:69: Lost braces 69 | \code{curve}{: the estimated causal curve} | ^ checkRd: (-1) FMA.concurrent.CV.Rd:73: Lost braces 73 | \code{coefficients}{: the coefficient with respect to the basis function} | ^ checkRd: (-1) FMA.concurrent.CV.Rd:75: Lost braces 75 | \code{curve}{: the estimated causal curve} | ^ checkRd: (-1) FMA.concurrent.Rd:47: Lost braces 47 | \code{coefficient}{the estimated coefficient with respect to the basis function} | ^ checkRd: (-1) FMA.concurrent.Rd:49: Lost braces 49 | \code{curve}{: the estimated coefficient curve} | ^ checkRd: (-1) FMA.concurrent.Rd:51: Lost braces 51 | \code{fitted}{: the fitted value of \code{M}} | ^ checkRd: (-1) FMA.concurrent.Rd:53: Lost braces 53 | \code{lambda}{: \eqn{\lambda} value} | ^ checkRd: (-1) FMA.concurrent.Rd:57: Lost braces 57 | \code{coefficient}{: the estimated coefficient with respect to the basis function} | ^ checkRd: (-1) FMA.concurrent.Rd:59: Lost braces 59 | \code{curve}{: the estimated coefficient curve} | ^ checkRd: (-1) FMA.concurrent.Rd:61: Lost braces 61 | \code{fitted}{: the fitted value of \code{Y}} | ^ checkRd: (-1) FMA.concurrent.Rd:63: Lost braces 63 | \code{lambda}{: \eqn{\lambda} value} | ^ checkRd: (-1) FMA.concurrent.Rd:67: Lost braces 67 | \code{coefficients}{: the coefficient with respect to the basis function} | ^ checkRd: (-1) FMA.concurrent.Rd:69: Lost braces 69 | \code{curve}{: the estimated causal curve} | ^ checkRd: (-1) FMA.concurrent.Rd:73: Lost braces 73 | \code{coefficients}{: the coefficient with respect to the basis function} | ^ checkRd: (-1) FMA.concurrent.Rd:75: Lost braces 75 | \code{curve}{: the estimated causal curve} | ^ checkRd: (-1) FMA.concurrent.boot.Rd:57: Lost braces 57 | \code{coefficients}{: the result of the coefficient estimates corresponding to the basis function} | ^ checkRd: (-1) FMA.concurrent.boot.Rd:59: Lost braces 59 | \code{curve}{: the point-wise estimate of the coefficient curve} | ^ checkRd: (-1) FMA.concurrent.boot.Rd:63: Lost braces 63 | \code{coefficients}{: the result of the coefficient estimates corresponding to the basis function} | ^ checkRd: (-1) FMA.concurrent.boot.Rd:65: Lost braces 65 | \code{curve}{: the point-wise estimate of the coefficient curve} | ^ checkRd: (-1) FMA.concurrent.boot.Rd:69: Lost braces 69 | \code{coefficients}{: the result of the coefficient estimates corresponding to the basis function} | ^ checkRd: (-1) FMA.concurrent.boot.Rd:71: Lost braces 71 | \code{curve}{: the point-wise estimate of the coefficient curve} | ^ checkRd: (-1) FMA.concurrent.boot.Rd:75: Lost braces 75 | \code{coefficients}{: the result of the coefficient estimates corresponding to the basis function} | ^ checkRd: (-1) FMA.concurrent.boot.Rd:77: Lost braces 77 | \code{curve}{: the point-wise estimate of the coefficient curve} | ^ checkRd: (-1) FMA.concurrent.boot.Rd:81: Lost braces 81 | \code{coefficients}{: the result of the coefficient estimates corresponding to the basis function} | ^ checkRd: (-1) FMA.concurrent.boot.Rd:83: Lost braces 83 | \code{curve}{: the point-wise estimate of the coefficient curve} | ^ checkRd: (-1) FMA.historical.CV.Rd:63: Lost braces 63 | \code{coefficient}{: the estimated coefficient with respect to the basis function} | ^ checkRd: (-1) FMA.historical.CV.Rd:65: Lost braces 65 | \code{curve}{: the estimated coefficient curve} | ^ checkRd: (-1) FMA.historical.CV.Rd:67: Lost braces 67 | \code{fitted}{: the fitted value of \code{M}} | ^ checkRd: (-1) FMA.historical.CV.Rd:69: Lost braces 69 | \code{lambda1}{: the chosen \eqn{\lambda} value on the \eqn{s} domain} | ^ checkRd: (-1) FMA.historical.CV.Rd:71: Lost braces 71 | \code{lambda2}{: the chosen \eqn{\lambda} value on the \eqn{t} domain} | ^ checkRd: (-1) FMA.historical.CV.Rd:75: Lost braces 75 | \code{coefficient}{: the estimated coefficient with respect to the basis function} | ^ checkRd: (-1) FMA.historical.CV.Rd:77: Lost braces 77 | \code{curve}{: the estimated coefficient curve} | ^ checkRd: (-1) FMA.historical.CV.Rd:79: Lost braces 79 | \code{fitted}{: the fitted value of \code{Y}} | ^ checkRd: (-1) FMA.historical.CV.Rd:81: Lost braces 81 | \code{lambda1}{: the chosen \eqn{\lambda} value on the \eqn{s} domain} | ^ checkRd: (-1) FMA.historical.CV.Rd:83: Lost braces 83 | \code{lambda2}{: the chosen \eqn{\lambda} value on the \eqn{t} domain} | ^ checkRd: (-1) FMA.historical.CV.Rd:87: Lost braces 87 | \code{curve}{: the estimated causal curve} | ^ checkRd: (-1) FMA.historical.CV.Rd:91: Lost braces 91 | \code{curve}{: the estimated causal curve} | ^ checkRd: (-1) FMA.historical.Rd:66: Lost braces 66 | \code{coefficient}{: the estimated coefficient with respect to the basis function} | ^ checkRd: (-1) FMA.historical.Rd:68: Lost braces 68 | \code{curve}{: the estimated coefficient curve} | ^ checkRd: (-1) FMA.historical.Rd:70: Lost braces 70 | \code{fitted}{: the fitted value of \code{M}} | ^ checkRd: (-1) FMA.historical.Rd:72: Lost braces 72 | \code{lambda1}{: the \eqn{\lambda} value on the \eqn{s} domain} | ^ checkRd: (-1) FMA.historical.Rd:74: Lost braces 74 | \code{lambda2}{: the \eqn{\lambda} value on the \eqn{t} domain} | ^ checkRd: (-1) FMA.historical.Rd:78: Lost braces 78 | \code{coefficient}{: the estimated coefficient with respect to the basis function} | ^ checkRd: (-1) FMA.historical.Rd:80: Lost braces 80 | \code{curve}{: the estimated coefficient curve} | ^ checkRd: (-1) FMA.historical.Rd:82: Lost braces 82 | \code{fitted}{: the fitted value of \code{Y}} | ^ checkRd: (-1) FMA.historical.Rd:84: Lost braces 84 | \code{lambda1}{: the \eqn{\lambda} value on the \eqn{s} domain} | ^ checkRd: (-1) FMA.historical.Rd:86: Lost braces 86 | \code{lambda2}{: the \eqn{\lambda} value on the \eqn{t} domain} | ^ checkRd: (-1) FMA.historical.Rd:90: Lost braces 90 | \code{curve}{: the estimated causal curve} | ^ checkRd: (-1) FMA.historical.Rd:94: Lost braces 94 | \code{curve}{: the estimated causal curve} | ^ checkRd: (-1) FMA.historical.boot.Rd:76: Lost braces 76 | \code{coefficients}{: the result of the coefficient estimates corresponding to the basis function} | ^ checkRd: (-1) FMA.historical.boot.Rd:78: Lost braces 78 | \code{curve}{: the point-wise estimate of the coefficient curve} | ^ checkRd: (-1) FMA.historical.boot.Rd:82: Lost braces 82 | \code{coefficients}{: the result of the coefficient estimates corresponding to the basis function} | ^ checkRd: (-1) FMA.historical.boot.Rd:84: Lost braces 84 | \code{curve}{: the point-wise estimate of the coefficient curve} | ^ checkRd: (-1) FMA.historical.boot.Rd:88: Lost braces 88 | \code{coefficients}{: the result of the coefficient estimates corresponding to the basis function} | ^ checkRd: (-1) FMA.historical.boot.Rd:90: Lost braces 90 | \code{curve}{: the point-wise estimate of the coefficient curve} | ^ checkRd: (-1) FMA.historical.boot.Rd:94: Lost braces 94 | \code{curve}{: the point-wise estimate of the coefficient curve} | ^ checkRd: (-1) FMA.historical.boot.Rd:98: Lost braces 98 | \code{curve}{: the point-wise estimate of the coefficient curve} | ^ * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK * checking examples with --run-donttest ... [107s/108s] ERROR Running examples in ‘cfma-Ex.R’ failed The error most likely occurred in: > ### Name: FMA.historical.CV > ### Title: Functional mediation analysis under historical influence model > ### Aliases: FMA.historical.CV > ### Keywords: models > > ### ** Examples > > > ################################################## > # Historical influence functional mediation model > data(env.historical) > Z<-get("Z",env.historical) > M<-get("M",env.historical) > Y<-get("Y",env.historical) > > ## No test: > # consider Fourier basis > fit<-FMA.historical.CV(Z,M,Y,delta.grid1=3,delta.grid2=3,delta.grid3=3, + intercept=FALSE,timeinv=c(0,300)) Error in designD.mat(Xts, intercept = intercept, basis1 = basis1, Ld2.basis1 = Ld2.basis1, : object 'lambda1' not found Calls: FMA.historical.CV -> FDA.historical.CV -> designD.mat Execution halted * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * checking for new files in some other directories ... OK * DONE Status: 1 ERROR, 1 NOTE See ‘/data/blackswan/ripley/R/packages/tests-devel/cfma.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 2:22.12, 135.55 + 5.70