* using log directory ‘/data/localhost/ripley/R/packages/tests-donttest/bcp.Rcheck’ * using R Under development (unstable) (2026-08-24 r90445) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2) GNU Fortran (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2) * running under: Fedora Linux 44 (Server Edition) * using session charset: UTF-8 * current time: 2026-08-24 21:30:41 UTC * checking for file ‘bcp/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘bcp’ version ‘4.0.4’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘bcp’ can be installed ... [75s/127s] OK * used C++ compiler: ‘g++ (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)’ * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking examples ... OK * checking examples with --run-donttest ... [172s/358s] ERROR Running examples in ‘bcp-Ex.R’ failed The error most likely occurred in: > ### Name: summary.bcp > ### Title: Summarizing Bayesian change point analysis results > ### Aliases: summary.bcp print.bcp > ### Keywords: datasets > > ### ** Examples > > ##### A random sample from a few normal distributions ##### > testdata <- c(rnorm(50), rnorm(50, 5, 1), rnorm(50)) > bcp.0 <- bcp(testdata) > summary(bcp.0) Bayesian Change Point (bcp) summary: Probability of a change in mean and posterior means: Probability X1 1 0.000 0.10725 2 0.000 0.10725 3 0.002 0.10725 4 0.002 0.10836 5 0.002 0.10841 6 0.004 0.10835 7 0.002 0.10893 8 0.000 0.10906 9 0.002 0.10906 10 0.002 0.10887 11 0.000 0.10879 12 0.002 0.10879 13 0.002 0.10835 14 0.000 0.10808 15 0.000 0.10808 16 0.000 0.10808 17 0.000 0.10808 18 0.002 0.10808 19 0.000 0.10798 20 0.000 0.10798 21 0.002 0.10798 22 0.002 0.10755 23 0.004 0.10701 24 0.004 0.10205 25 0.000 0.10593 26 0.002 0.10593 27 0.004 0.10568 28 0.002 0.10527 29 0.000 0.10531 30 0.000 0.10531 31 0.000 0.10531 32 0.004 0.10531 33 0.000 0.10513 34 0.002 0.10513 35 0.000 0.10501 36 0.002 0.10501 37 0.002 0.10528 38 0.004 0.10621 39 0.004 0.10709 40 0.000 0.10666 41 0.000 0.10666 42 0.002 0.10666 43 0.000 0.10695 44 0.002 0.10695 45 0.004 0.10691 46 0.000 0.10752 47 0.004 0.10752 48 0.000 0.10927 49 0.002 0.10927 50 1.000 0.11085 51 0.004 5.10994 52 0.004 5.10906 53 0.002 5.11033 54 0.002 5.11049 55 0.000 5.11146 56 0.000 5.11146 57 0.002 5.11146 58 0.000 5.11137 59 0.002 5.11137 60 0.000 5.11123 61 0.002 5.11123 62 0.002 5.11064 63 0.000 5.11012 64 0.000 5.11012 65 0.004 5.11012 66 0.000 5.10938 67 0.004 5.10938 68 0.002 5.11122 69 0.004 5.11096 70 0.002 5.11044 71 0.006 5.10984 72 0.008 5.10639 73 0.000 5.10458 74 0.004 5.10458 75 0.002 5.10376 76 0.000 5.10357 77 0.000 5.10357 78 0.002 5.10357 79 0.004 5.10346 80 0.000 5.10324 81 0.002 5.10324 82 0.000 5.10337 83 0.002 5.10337 84 0.002 5.10335 85 0.000 5.10364 86 0.002 5.10364 87 0.004 5.10381 88 0.000 5.10379 89 0.000 5.10379 90 0.002 5.10379 91 0.004 5.10519 92 0.002 5.10551 93 0.000 5.10537 94 0.006 5.10537 95 0.018 5.10661 96 0.020 5.08841 97 0.004 5.06668 98 0.012 5.06298 99 0.000 5.05096 100 1.000 5.05096 101 0.000 -0.08568 102 0.000 -0.08568 103 0.002 -0.08568 104 0.002 -0.08328 105 0.002 -0.08277 106 0.002 -0.07981 107 0.002 -0.08007 108 0.000 -0.08059 109 0.002 -0.08059 110 0.008 -0.08144 111 0.002 -0.08815 112 0.004 -0.08920 113 0.006 -0.09104 114 0.006 -0.09463 115 0.008 -0.09777 116 0.004 -0.10174 117 0.004 -0.10357 118 0.002 -0.10528 119 0.006 -0.10610 120 0.010 -0.10881 121 0.002 -0.11208 122 0.004 -0.11289 123 0.008 -0.11498 124 0.006 -0.11855 125 0.010 -0.12150 126 0.004 -0.12663 127 0.014 -0.12895 128 0.014 -0.13723 129 0.006 -0.14570 130 0.008 -0.14911 131 0.026 -0.15373 132 0.006 -0.16874 133 0.030 -0.17215 134 0.002 -0.19180 135 0.022 -0.19287 136 0.004 -0.20588 137 0.008 -0.20783 138 0.002 -0.21034 139 0.010 -0.21131 140 0.002 -0.21545 141 0.000 -0.21597 142 0.000 -0.21597 143 0.002 -0.21597 144 0.002 -0.21666 145 0.002 -0.21733 146 0.000 -0.21686 147 0.006 -0.21686 148 0.016 -0.22205 149 0.002 -0.24281 150 NA -0.24538 > plot(bcp.0, main="Univariate Change Point Example") > > ##### An MCMC summary from the ``coda'' package ##### > ## No test: > > if(requireNamespace("coda")) { + bcp.0 <- bcp(testdata, return.mcmc=TRUE) + bcp.mcmc <- as.mcmc(t(bcp.0$mcmc.means)) + summary(bcp.mcmc) + heidel.diag(bcp.mcmc) # an example convergence diagnostic + # from the coda package. + } Loading required namespace: coda Error in as.mcmc(t(bcp.0$mcmc.means)) : could not find function "as.mcmc" Execution halted * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * checking for new files in some other directories ... OK * DONE Status: 1 ERROR See ‘/data/localhost/ripley/R/packages/tests-donttest/bcp.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 10:22.71, 279.15 + 28.04