* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/bartXViz.Rcheck’ * using R Under development (unstable) (2026-01-21 r89314) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) * running under: Fedora Linux 40 (Workstation Edition) * using session charset: UTF-8 * checking for file ‘bartXViz/DESCRIPTION’ ... OK * this is package ‘bartXViz’ version ‘1.0.9’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘bartXViz’ can be installed ... [17s/17s] OK * used C++ compiler: ‘g++ (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’ * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [25s/25s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking examples ... OK * checking examples with --run-donttest ... ERROR Running examples in ‘bartXViz-Ex.R’ failed The error most likely occurred in: > ### Name: Explain.bartMachine > ### Title: Approximate Shapley Values Computed from a BART Model Fitted > ### using 'bartMachine' > ### Aliases: Explain.bartMachine > > ### ** Examples > > ## No test: > ## Friedman data > set.seed(2025) > n <- 200 > p <- 5 > X <- data.frame(matrix(runif(n * p), ncol = p)) > y <- 10 * sin(pi* X[ ,1] * X[,2]) +20 * (X[,3] -.5)^2 + 10 * X[ ,4] + 5 * X[,5] + rnorm(n) > > ## Using the bartMachine > model <- bartMachine::bartMachine(X, y, seed = 2025, num_iterations_after_burn_in =200 ) bartMachine initializing with 50 trees... bartMachine vars checked... Error in .jnew("bartMachine.bartMachineRegressionMultThread") : java.lang.NoClassDefFoundError: jdk/incubator/vector/Vector Calls: -> build_bart_machine -> .jnew Execution halted * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * checking for new files in some other directories ... OK * DONE Status: 1 ERROR See ‘/data/blackswan/ripley/R/packages/tests-devel/bartXViz.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 2:16.34, 107.97 + 27.71