* using log directory ‘/data/localhost/ripley/R/packages/tests-donttest/appraise.Rcheck’
* using R Under development (unstable) (2026-08-24 r90445)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)
    GNU Fortran (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)
* running under: Fedora Linux 44 (Server Edition)
* using session charset: UTF-8
* current time: 2026-08-24 20:23:44 UTC
* checking for file ‘appraise/DESCRIPTION’ ... OK
* this is package ‘appraise’ version ‘0.1.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... INFO
Package suggested but not available for checking: ‘cmdstanr’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘appraise’ can be installed ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking examples with --run-donttest ... ERROR
Running examples in ‘appraise-Ex.R’ failed
The error most likely occurred in:

> ### Name: run_appraise_model
> ### Title: Run the appraise Stan model
> ### Aliases: run_appraise_model
> 
> ### ** Examples
> 
> # Define a simple bias specification with one bias
> bias_spec <- build_bias_specification(
+   num_biases = 1,
+   b_types = "Confounding",
+   ab_params = list(
+     Confounding = c(2, 5)
+   )
+ )
> 
> bias_spec
$NN
[1] 1

$b
[1] 1

$s
[1] 999

$d
[1] 999

$e
[1] 999

$en
[1] 999

$ab_values
[1] 2 5

$skn_values
[1] 999 999 999

$de_values
[1] 999 999

$ex_values
[1] 999

$exneg_values
[1] 999

> 
> ## No test: 
> # Run the AppRaise model for a single study. Requires cmdstanr and a CmdStan
> # installation.
> fit <- run_appraise_model(
+   bias_spec = bias_spec,
+   yhat = -0.6,
+   stdev = 0.12,
+   threshold_value = -0.4,
+   iter_sampling = 500,
+   iter_warmup = 250,
+   chains = 2,
+   seed = 123
+ )
Error: cmdstanr is required but not installed
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/localhost/ripley/R/packages/tests-donttest/appraise.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 1:20.85, 36.28 + 21.73