* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/antaresProcessing.Rcheck’
* using R Under development (unstable) (2025-12-20 r89211)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* checking for file ‘antaresProcessing/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘antaresProcessing’ version ‘0.18.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘antaresProcessing’ can be installed ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking examples with --run-donttest ... ERROR
Running examples in ‘antaresProcessing-Ex.R’ failed
The error most likely occurred in:

> ### Name: thermalGroupCapacities
> ### Title: compute thermal capacities from study
> ### Aliases: thermalGroupCapacities
> 
> ### ** Examples
> 
> ## No test: 
> library(antaresRead)
> # with study test for example (study is in package antaresRead)
> sourcedir <- system.file("testdata", package = "antaresRead")
> 
> # untar study in temp dir
> path_latest <- file.path(tempdir(), "latest")
> untar(file.path(sourcedir, "antares-test-study.tar.gz"), exdir = path_latest)
> 
> study_path <- file.path(path_latest, "test_case")
> 
> # set path to your Antares simulation
> opts <- setSimulationPath(study_path)
> 
> mydata <- readAntares( areas = "all",
+                        mcYears = "all", showProgress = FALSE)
> 
> # long to wide format
> res <- thermalGroupCapacities(opts = opts)
Error in `[.data.table`(ref_filter_by_vers, , `:=`(count, .N), by = select_col,  : 
  attempt access index 9/9 in VECTOR_ELT
Calls: thermalGroupCapacities ... .readClusterDesc -> get_input_cluster_properties -> [ -> [.data.table
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [19s/19s]
 [19s/19s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(antaresProcessing)
  Loading required package: antaresRead
  
  Attaching package: 'antaresProcessing'
  
  The following object is masked from 'package:testthat':
  
      compare
  
  > 
  > test_check("antaresProcessing")
  Importing links
  
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  Saving _problems/test-addCongestionLink-8.R
  Saving _problems/test-addDownwardMargin-13.R
  Saving _problems/test-fillClusterDesc-7.R
  Saving _problems/test-loadFactor-12.R
  Saving _problems/test-modulation-8.R
  Saving _problems/test-surplusClusters-9.R
  Saving _problems/test-surplusSectors-10.R
  [ FAIL 7 | WARN 2 | SKIP 2 | PASS 130 ]
  
  ══ Skipped tests (2) ═══════════════════════════════════════════════════════════
  • empty test (2): 'test-aggregateMcYears.R:7:3',
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-addCongestionLink.R:8:3'): (code run outside of `test_that()`) ──
  Error in ``[.data.table`(x, , `:=`(c("congestionFrequencyDirect", "congestionFrequencyIndirect", "congestionHoursDirect", "congestionHoursIndirect"), list(round(sum((`CONG. PROB +` != 0)/.N), 2), round(sum((`CONG. PROB -` != 0)/.N), 2), sum(`CONG. PROB +` != 0), sum(`CONG. PROB -` != 0))), by = by)`: attempt access index 34/34 in VECTOR_ELT
  Backtrace:
      ▆
   1. └─base::sapply(...) at test-addCongestionLink.R:3:1
   2.   └─base::lapply(X = X, FUN = FUN, ...)
   3.     └─antaresProcessing (local) FUN(X[[i]], ...)
   4.       └─antaresProcessing::addCongestionLink(dt) at test-addCongestionLink.R:8:3
   5.         ├─...[]
   6.         ├─antaresRead:::`[.antaresDataTable`(...)
   7.         ├─base::NextMethod("[", x)
   8.         └─data.table:::`[.data.table`(...)
  ── Error ('test-addDownwardMargin.R:7:3'): (code run outside of `test_that()`) ──
  Error in ``[.data.table`(ref_filter_by_vers, , `:=`(count, .N), by = select_col, keyby = TRUE)`: attempt access index 9/9 in VECTOR_ELT
  Backtrace:
       ▆
    1. └─base::sapply(...) at test-addDownwardMargin.R:3:1
    2.   └─base::lapply(X = X, FUN = FUN, ...)
    3.     └─antaresProcessing (local) FUN(X[[i]], ...)
    4.       ├─base::suppressWarnings(...) at test-addDownwardMargin.R:7:3
    5.       │ └─base::withCallingHandlers(...)
    6.       └─antaresRead::readAntares(...)
    7.         └─antaresRead:::.importOutputForClusters(...)
    8.           └─antaresRead:::.importOutputForClusters_w_mustrun(...)
    9.             └─antaresRead::readClusterDesc(opts)
   10.               └─antaresRead:::.readClusterDesc(...)
   11.                 └─antaresRead:::get_input_cluster_properties(...)
   12.                   ├─ref_filter_by_vers[, `:=`(count, .N), by = select_col, keyby = TRUE]
   13.                   └─data.table:::`[.data.table`(...)
  ── Error ('test-fillClusterDesc.R:7:3'): (code run outside of `test_that()`) ───
  Error in ``[.data.table`(ref_filter_by_vers, , `:=`(count, .N), by = select_col, keyby = TRUE)`: attempt access index 9/9 in VECTOR_ELT
  Backtrace:
      ▆
   1. └─base::sapply(...) at test-fillClusterDesc.R:3:1
   2.   └─base::lapply(X = X, FUN = FUN, ...)
   3.     └─antaresProcessing (local) FUN(X[[i]], ...)
   4.       └─antaresRead::readClusterDesc() at test-fillClusterDesc.R:7:3
   5.         └─antaresRead:::.readClusterDesc(...)
   6.           └─antaresRead:::get_input_cluster_properties(...)
   7.             ├─ref_filter_by_vers[, `:=`(count, .N), by = select_col, keyby = TRUE]
   8.             └─data.table:::`[.data.table`(...)
  ── Error ('test-loadFactor.R:12:5'): loadFactor ────────────────────────────────
  Error in ``[.data.table`(ref_filter_by_vers, , `:=`(count, .N), by = select_col, keyby = TRUE)`: attempt access index 9/9 in VECTOR_ELT
  Backtrace:
      ▆
   1. ├─base::suppressWarnings(loadFactor(mydata)) at test-loadFactor.R:12:5
   2. │ └─base::withCallingHandlers(...)
   3. └─antaresProcessing::loadFactor(mydata)
   4.   └─antaresRead::readClusterDesc(opts)
   5.     └─antaresRead:::.readClusterDesc(...)
   6.       └─antaresRead:::get_input_cluster_properties(...)
   7.         ├─ref_filter_by_vers[, `:=`(count, .N), by = select_col, keyby = TRUE]
   8.         └─data.table:::`[.data.table`(...)
  ── Error ('test-modulation.R:8:3'): (code run outside of `test_that()`) ────────
  Error in ``[.data.table`(ref_filter_by_vers, , `:=`(count, .N), by = select_col, keyby = TRUE)`: attempt access index 9/9 in VECTOR_ELT
  Backtrace:
       ▆
    1. └─base::sapply(...) at test-modulation.R:3:1
    2.   └─base::lapply(X = X, FUN = FUN, ...)
    3.     └─antaresProcessing (local) FUN(X[[i]], ...)
    4.       ├─base::suppressWarnings(modulation(mydata)) at test-modulation.R:8:3
    5.       │ └─base::withCallingHandlers(...)
    6.       └─antaresProcessing::modulation(mydata)
    7.         └─antaresRead::readClusterDesc(opts)
    8.           └─antaresRead:::.readClusterDesc(...)
    9.             └─antaresRead:::get_input_cluster_properties(...)
   10.               ├─ref_filter_by_vers[, `:=`(count, .N), by = select_col, keyby = TRUE]
   11.               └─data.table:::`[.data.table`(...)
  ── Error ('test-surplusClusters.R:7:3'): (code run outside of `test_that()`) ───
  Error in ``[.data.table`(ref_filter_by_vers, , `:=`(count, .N), by = select_col, keyby = TRUE)`: attempt access index 9/9 in VECTOR_ELT
  Backtrace:
       ▆
    1. └─base::sapply(...) at test-surplusClusters.R:3:1
    2.   └─base::lapply(X = X, FUN = FUN, ...)
    3.     └─antaresProcessing (local) FUN(X[[i]], ...)
    4.       └─antaresRead::readAntares(...) at test-surplusClusters.R:7:3
    5.         └─antaresRead (local) .addOutputToRes(...)
    6.           ├─base::suppressWarnings(...)
    7.           │ └─base::withCallingHandlers(...)
    8.           └─plyr::llply(...)
    9.             ├─base::structure(lapply(pieces, .fun, ...), dim = dim(pieces))
   10.             └─base::lapply(pieces, .fun, ...)
   11.               └─antaresRead (local) FUN(X[[i]], ...)
   12.                 └─antaresRead (local) outputFun(x, ...)
   13.                   └─antaresRead::readClusterDesc(opts)
   14.                     └─antaresRead:::.readClusterDesc(...)
   15.                       └─antaresRead:::get_input_cluster_properties(...)
   16.                         ├─ref_filter_by_vers[, `:=`(count, .N), by = select_col, keyby = TRUE]
   17.                         └─data.table:::`[.data.table`(...)
  ── Error ('test-surplusSectors.R:10:3'): (code run outside of `test_that()`) ───
  Error in ``[.data.table`(ref_filter_by_vers, , `:=`(count, .N), by = select_col, keyby = TRUE)`: attempt access index 9/9 in VECTOR_ELT
  Backtrace:
       ▆
    1. └─base::sapply(...) at test-surplusSectors.R:3:1
    2.   └─base::lapply(X = X, FUN = FUN, ...)
    3.     └─antaresProcessing (local) FUN(X[[i]], ...)
    4.       ├─base::suppressWarnings(surplusSectors(mydata)) at test-surplusSectors.R:10:3
    5.       │ └─base::withCallingHandlers(...)
    6.       └─antaresProcessing::surplusSectors(mydata)
    7.         └─antaresProcessing::surplusClusters(x, "hourly")
    8.           └─antaresRead::readClusterDesc(opts)
    9.             └─antaresRead:::.readClusterDesc(...)
   10.               └─antaresRead:::get_input_cluster_properties(...)
   11.                 ├─ref_filter_by_vers[, `:=`(count, .N), by = select_col, keyby = TRUE]
   12.                 └─data.table:::`[.data.table`(...)
  
  [ FAIL 7 | WARN 2 | SKIP 2 | PASS 130 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 2 ERRORs
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/antaresProcessing.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 1:34.51, 75.17 + 19.23