* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/TimeDepFrail.Rcheck’
* using R Under development (unstable) (2025-11-16 r89026)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* checking for file ‘TimeDepFrail/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘TimeDepFrail’ version ‘0.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘TimeDepFrail’ can be installed ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [12s/12s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking examples with --run-donttest ... [520s/536s] ERROR
Running examples in ‘TimeDepFrail-Ex.R’ failed
The error most likely occurred in:

> ### Name: AdPaikModel
> ### Title: Adapted Paik et Al.'s Model: Time-Dependent Shared Frailty Cox
> ###   Model
> ### Aliases: AdPaikModel
> 
> ### ** Examples
> 
> # Consider the 'Academic Dropout dataset'
> data(data_dropout)
> 
> # Define the variables needed for the model execution
> formula <- time_to_event ~ Gender + CFUP + cluster(group)
> time_axis <- c(1.0, 1.4, 1.8, 2.3, 3.1, 3.8, 4.3, 5.0, 5.5, 5.8, 6.0)
> eps <- 1e-10
> categories_range_min <- c(-8, -2, eps, eps, eps)
> categories_range_max <- c(-eps, 0, 1 - eps, 1, 10)
> 
> ## No test: 
> # Call the main model
> result <- AdPaikModel(formula, data_dropout, time_axis,
+                       categories_range_min, categories_range_max, TRUE)
Error in while (r <= n_run & actual_tol_ll > tol_ll) { : 
  missing value where TRUE/FALSE needed
Calls: AdPaikModel
Execution halted
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/TimeDepFrail.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 9:47.46, 556.59 + 12.17