* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/TREXr.Rcheck’
* using R Under development (unstable) (2022-10-04 r83023)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘TREXr/DESCRIPTION’ ... OK
* this is package ‘TREXr’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘TREXr’ can be installed ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
  ‘boot’ ‘chron’ ‘randtoolbox’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [17s/17s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking examples ... OK
* checking examples with --run-donttest ... [61s/61s] ERROR
Running examples in ‘TREXr-Ex.R’ failed
The error most likely occurred in:

> ### Name: out.data
> ### Title: Generating TDM output
> ### Aliases: out.data
> 
> ### ** Examples
> 
> ## No test: 
> #Gc response function
> #Gc response function
> raw   <- is.trex(example.data(type="doy"), tz="GMT",
+                  time.format="%H:%M", solar.time=TRUE,
+                  long.deg=7.7459, ref.add=FALSE)
> 
> input <- dt.steps(input=raw, start="2013-05-01 00:00", end="2013-11-01 00:00",
+                    time.int=15, max.gap=60, decimals=10, df=FALSE)
> 
> input[which(input<0.2)]<- NA
> input <- tdm_dt.max(input, methods=c("dr"), det.pd=TRUE, interpolate=FALSE,
+                  max.days=10, df=FALSE)
> 
> output.data<- tdm_cal.sfd(input,make.plot=TRUE,df=FALSE,wood="Coniferous", decimals = 6)
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> 
> input<- output.data$sfd.dr$sfd
> 
> output<- out.data(input=input, vpd.input=vpd, sr.input=sr, prec.input=preci,
+                   low.sr = 150, peak.sr=300, vpd.cutoff= 0.5, prec.lim=1,
+                   method="env.filt", max.quant=0.99, make.plot=TRUE)
Warning in zoo::zoo(adding$prec, order.by = base::as.POSIXct(adding$timestamp,  :
  some methods for “zoo” objects do not work if the index entries in ‘order.by’ are not unique
Warning in zoo::zoo(adding$sr, order.by = base::as.POSIXct(adding$timestamp,  :
  some methods for “zoo” objects do not work if the index entries in ‘order.by’ are not unique
Error in merge.zoo(..., all = all, fill = fill, suffixes = suffixes, retclass = "zoo",  : 
  series cannot be merged with non-unique index entries in a series
Calls: out.data -> $<- -> $<-.zoo -> cbind -> cbind -> merge.zoo
Execution halted
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/TREXr.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 1:49.68, 103.43 + 5.63