* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/TPMplt.Rcheck’
* using R Under development (unstable) (2025-12-20 r89211)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* checking for file ‘TPMplt/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘TPMplt’ version ‘0.1.7’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘TPMplt’ can be installed ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [11s/11s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘TPMplt-Ex.R’ failed
The error most likely occurred in:

> ### Name: TPM2dplt
> ### Title: Plot 2d thermal process maps
> ### Aliases: TPM2dplt
> ### Keywords: PLTbuilder Processing-map
> 
> ### ** Examples
> 
> epstable <- epsExtract(TPMdata, 0.7, 2, 3)
> DMM <- DMMprocess(epstable)
> PLTbd <- SVRModel(DMM)
> TPM2dplt(PLTbd)
Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0.
ℹ Please use the `linewidth` argument instead.
ℹ The deprecated feature was likely used in the TPMplt package.
  Please report the issue at <https://github.com/CubicZebra/TPMplt/issues>.
Warning: The `size` argument of `element_rect()` is deprecated as of ggplot2 3.4.0.
ℹ Please use the `linewidth` argument instead.
ℹ The deprecated feature was likely used in the TPMplt package.
  Please report the issue at <https://github.com/CubicZebra/TPMplt/issues>.
Error in `metR::geom_text_contour()`:
! Problem while converting geom to grob.
ℹ Error occurred in the 3rd layer.
Caused by error in `[.data.table`:
! attempt access index 18/18 in VECTOR_ELT
Backtrace:
     ▆
  1. ├─base (local) `<fn>`(x)
  2. ├─ggplot2 (local) `print.ggplot2::ggplot`(x)
  3. │ ├─ggplot2::ggplot_gtable(data)
  4. │ └─ggplot2 (local) `ggplot_gtable.ggplot2::ggplot_built`(data)
  5. │   └─ggplot2:::by_layer(...)
  6. │     ├─rlang::try_fetch(...)
  7. │     │ ├─base::tryCatch(...)
  8. │     │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
  9. │     │ │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 10. │     │ │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
 11. │     │ └─base::withCallingHandlers(...)
 12. │     └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
 13. │       └─l$draw_geom(d, layout)
 14. │         └─ggplot2 (local) draw_geom(..., self = self)
 15. │           └─self$geom$draw_layer(...)
 16. │             └─ggplot2 (local) draw_layer(..., self = self)
 17. │               └─base::lapply(...)
 18. │                 └─ggplot2 (local) FUN(X[[i]], ...)
 19. │                   ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
 20. │                   └─self$draw_panel(...)
 21. │                     └─metR (local) draw_panel(...)
 22. │                       ├─data[, `:=`(N, .N), by = .(group, piece)]
 23. │                       └─data.table:::`[.data.table`(...)
 24. └─base::.handleSimpleError(...)
 25.   └─rlang (local) h(simpleError(msg, call))
 26.     └─handlers[[1L]](cnd)
 27.       └─cli::cli_abort(...)
 28.         └─rlang::abort(...)
Execution halted
* checking examples with --run-donttest ... ERROR
Running examples in ‘TPMplt-Ex.R’ failed
The error most likely occurred in:

> ### Name: Abstract-TPMplt
> ### Title: Tool-Kit for Dynamic Materials Model and Thermal Processing Maps
> ### Aliases: Abstract-TPMplt
> 
> ### ** Examples
> 
> ## No test: 
> # Check the factors in column names of input data:
> # Note: Temperature in layer2, Strain Rate in layer3.
> require(VBTree)
Loading required package: VBTree
> vbt <- dl2vbt(chrvec2dl(colnames(TPMdata)))
> vbt
$tree
$tree[[1]]
[1] "Strain" "Stress"

$tree[[2]]
$tree[[2]][[1]]
[1] "900"  "950"  "1000" "1050" "1100" "1150" "1200"

$tree[[2]][[2]]
$tree[[2]][[2]][[1]]
[1] "0.001" "0.01"  "0.1"   "1"    

$tree[[2]][[2]][[2]]
$tree[[2]][[2]][[2]][[1]]
[1] "60%"

$tree[[2]][[2]][[2]][[2]]
list()





$dims
[1] 2 7 4 1

attr(,"class")
[1] "Vector.Binary.Tree"
> 
> # Export Strain Rate-Temperature table based on
> # given strain condition (epsilon):
> epstable <- epsExtract(TPMdata, 0.7, 2, 3)
> 
> # Build dynamic materials model (DMM) from Strain
> # Rate-Temperature table:
> DMM <- DMMprocess(epstable)
> 
> # Choose regression method for plots:
> PLTbd <- SVRModel(DMM)
> 
> # 2D processing-map through selected regression method:
> TPM2dplt(PLTbd)
Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0.
ℹ Please use the `linewidth` argument instead.
ℹ The deprecated feature was likely used in the TPMplt package.
  Please report the issue at <https://github.com/CubicZebra/TPMplt/issues>.
Warning: The `size` argument of `element_rect()` is deprecated as of ggplot2 3.4.0.
ℹ Please use the `linewidth` argument instead.
ℹ The deprecated feature was likely used in the TPMplt package.
  Please report the issue at <https://github.com/CubicZebra/TPMplt/issues>.
Error in `metR::geom_text_contour()`:
! Problem while converting geom to grob.
ℹ Error occurred in the 3rd layer.
Caused by error in `[.data.table`:
! attempt access index 18/18 in VECTOR_ELT
Backtrace:
     ▆
  1. ├─base (local) `<fn>`(x)
  2. ├─ggplot2 (local) `print.ggplot2::ggplot`(x)
  3. │ ├─ggplot2::ggplot_gtable(data)
  4. │ └─ggplot2 (local) `ggplot_gtable.ggplot2::ggplot_built`(data)
  5. │   └─ggplot2:::by_layer(...)
  6. │     ├─rlang::try_fetch(...)
  7. │     │ ├─base::tryCatch(...)
  8. │     │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
  9. │     │ │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 10. │     │ │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
 11. │     │ └─base::withCallingHandlers(...)
 12. │     └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
 13. │       └─l$draw_geom(d, layout)
 14. │         └─ggplot2 (local) draw_geom(..., self = self)
 15. │           └─self$geom$draw_layer(...)
 16. │             └─ggplot2 (local) draw_layer(..., self = self)
 17. │               └─base::lapply(...)
 18. │                 └─ggplot2 (local) FUN(X[[i]], ...)
 19. │                   ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
 20. │                   └─self$draw_panel(...)
 21. │                     └─metR (local) draw_panel(...)
 22. │                       ├─data[, `:=`(N, .N), by = .(group, piece)]
 23. │                       └─data.table:::`[.data.table`(...)
 24. └─base::.handleSimpleError(...)
 25.   └─rlang (local) h(simpleError(msg, call))
 26.     └─handlers[[1L]](cnd)
 27.       └─cli::cli_abort(...)
 28.         └─rlang::abort(...)
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [21s/21s] ERROR
Error(s) in re-building vignettes:
  ...
--- re-building ‘TPMplt-vignette.Rmd’ using rmarkdown

Quitting from TPMplt-vignette.Rmd:164-166 [unnamed-chunk-10]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `metR::geom_text_contour()`:
! Problem while converting geom to grob.
ℹ Error occurred in the 3rd layer.
Caused by error in `[.data.table`:
! attempt access index 18/18 in VECTOR_ELT
---
Backtrace:
     ▆
  1. ├─base::withVisible(knit_print(x, ...))
  2. ├─knitr::knit_print(x, ...)
  3. └─knitr:::knit_print.default(x, ...)
  4.   └─knitr::normal_print(x)
  5.     ├─base::print(x)
  6.     └─ggplot2 (local) `print.ggplot2::ggplot`(x)
  7.       ├─ggplot2::ggplot_gtable(data)
  8.       └─ggplot2 (local) `ggplot_gtable.ggplot2::ggplot_built`(data)
  9.         └─ggplot2:::by_layer(...)
 10.           ├─rlang::try_fetch(...)
 11.           │ ├─base::tryCatch(...)
 12.           │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 13.           │ │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 14.           │ │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
 15.           │ └─base::withCallingHandlers(...)
 16.           └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
 17.             └─l$draw_geom(d, layout)
 18.               └─ggplot2 (local) draw_geom(..., self = self)
 19.                 └─self$geom$draw_layer(...)
 20.                   └─ggplot2 (local) draw_layer(..., self = self)
 21.                     └─base::lapply(...)
 22.                       └─ggplot2 (local) FUN(X[[i]], ...)
 23.                         ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
 24.                         └─self$draw_panel(...)
 25.                           └─metR (local) draw_panel(...)
 26.                             ├─data[, `:=`(N, .N), by = .(group, piece)]
 27.                             └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'TPMplt-vignette.Rmd' failed with diagnostics:
Problem while converting geom to grob.
ℹ Error occurred in the 3rd layer.
Caused by error in `[.data.table`:
! attempt access index 18/18 in VECTOR_ELT
--- failed re-building ‘TPMplt-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘TPMplt-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 3 ERRORs
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/TPMplt.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 1:39.70, 80.64 + 18.55