* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/TDMR.Rcheck’
* using R Under development (unstable) (2022-05-09 r82330)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘TDMR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘TDMR’ version ‘2.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘TDMR’ can be installed ... [25s/25s] OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [49s/48s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [17s/17s] OK
* checking examples with --run-donttest ... ERROR
Running examples in ‘TDMR-Ex.R’ failed
The error most likely occurred in:

> ### Name: tdmBigLoop
> ### Title: Tuning and unbiased evaluation in a big loop.
> ### Aliases: tdmBigLoop
> 
> ### ** Examples
> 
> #*# This demo shows a complete tuned data mining process (level 3 of TDMR) where 
> #*# the data mining task is the classification task SONAR (from UCI repository, 
> #*# http://archive.ics.uci.edu/ml/datasets/Connectionist+Bench+%28Sonar,+Mines+vs.+Rocks%29).
> #*# The data mining process is in main_sonar.r, which calls tdmClassifyLoop and tdmClassify
> #*# with Random Forest as the prediction model. 
> #*# The three parameter to be tuned are CUTOFF1, CLASSWT2 and XPERC, as specified 
> #*# in controlSC() (control_sonar.r). The tuner used here is LHD.  
> #*# Tuning runs are rather short, to make the example run quickly. 
> #*# Do not expect good numeric results. 
> #*# See demo/demo03sonar_B.r for a somewhat longer tuning run, with two tuners SPOT and LHD.
> 
>   ## path is the dir with data and main_*.r file:
>   path <- paste(find.package("TDMR"), "demo02sonar",sep="/");
>   #path <- paste("../../inst", "demo02sonar",sep="/");
> 
>   ## control settings for TDMR
>   tdm <- list( mainFunc="main_sonar"
+              , runList = c("sonar_04.conf")
+              , umode="CV"              # { "CV" | "RSUB" | "TST" | "SP_T" }
+              , tuneMethod = c("lhd")
+              , filenameEnvT="exBigLoop.RData"   # file to save environment envT 
+              , nrun=1, nfold=2         # repeats and CV-folds for the unbiased runs
+              , nExperim=1
+              , optsVerbosity = 0       # the verbosity for the unbiased runs
+              );
>   source(paste(path,"main_sonar.r",sep="/"));    # main_sonar, readTrnSonar
> ## Don't show: 
>   #*# This demo is for "R CMD check" (runs in half the time) 
>   source(paste(path,"control_sonar_check.r",sep="/")); # controlDM, controlSC
> ## End(Don't show)
> ## No test: 
>   #*# This demo is for example and help (more meaningful, a bit higher budget)
>   source(paste(path,"control_sonar.r",sep="/")); # controlDM, controlSC
Warning in file(filename, "r", encoding = encoding) :
  cannot open file '/data/blackswan/ripley/R/packages/tests-devel/TDMR.Rcheck/TDMR/demo02sonar/control_sonar.r': No such file or directory
Error in file(filename, "r", encoding = encoding) : 
  cannot open the connection
Calls: source -> file
Execution halted
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/TDMR.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 3:07.85, 166.27 + 22.06