* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/SQMtools.Rcheck’ * using R Under development (unstable) (2023-08-31 r85038) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 13.2.1 20230728 (Red Hat 13.2.1-1) GNU Fortran (GCC) 13.2.1 20230728 (Red Hat 13.2.1-1) * running under: Fedora Linux 38 (Workstation Edition) * using session charset: UTF-8 * checking for file ‘SQMtools/DESCRIPTION’ ... OK * this is package ‘SQMtools’ version ‘1.6.2’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘SQMtools’ can be installed ... [21s/21s] OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [11s/11s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [17s/17s] OK * checking examples with --run-donttest ... ERROR Running examples in ‘SQMtools-Ex.R’ failed The error most likely occurred in: > ### Name: exportKrona > ### Title: Export the taxonomy of a SQM object into a Krona Chart > ### Aliases: exportKrona > > ### ** Examples > > ## No test: > data(Hadza) > exportKrona(Hadza) Warning in system("ktImportText", ignore.stdout = TRUE, ignore.stderr = TRUE) : error in running command Error in exportKrona(Hadza) : ktImportText (from KronaTools) is not present in your PATH. KronaTools can be downloaded from https://github.com/marbl/Krona Execution halted * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * checking for new files in some other directories ... OK * DONE Status: 1 ERROR See ‘/data/blackswan/ripley/R/packages/tests-devel/SQMtools.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 1:16.37, 70.58 + 5.46