* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/SHARK4R.Rcheck’
* using R Under development (unstable) (2025-12-08 r89124)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* checking for file ‘SHARK4R/DESCRIPTION’ ... OK
* this is package ‘SHARK4R’ version ‘1.0.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SHARK4R’ can be installed ... [27s/28s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [39s/40s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [13s/13s] OK
* checking examples with --run-donttest ... [85s/146s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘spelling.R’
  Running ‘testthat.R’ [24s/26s]
 [25s/27s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [82s/126s] OK
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... NOTE
Found the following files/directories:
  ‘~/.cache/R/SHARK4R’ ‘~/.cache/R/SHARK4R/PEG_BVOL.zip’
  ‘~/.cache/R/SHARK4R/call_29521ff4297d5acdbb04f8808052ea39.rds’
  ‘~/.cache/R/SHARK4R/call_42cdbe033252bd6bfd3982e61c0dff04.rds’
  ‘~/.cache/R/SHARK4R/call_535e2838c1bd76d9191ea9a9ad00dffe.rds’
  ‘~/.cache/R/SHARK4R/call_56df029bae4ed0d86a97efa1fdb35d6a.rds’
  ‘~/.cache/R/SHARK4R/call_6c889b66c92da73816e1b45bd61fbc95.rds’
  ‘~/.cache/R/SHARK4R/call_7168c500881d8e72cc7c7d12f4ca8a21.rds’
  ‘~/.cache/R/SHARK4R/call_95d8d0dc038fa77cd3aee7f13559ffff.rds’
  ‘~/.cache/R/SHARK4R/call_9a523da0fb4a0f17b2e3aeee3a25fdce.rds’
  ‘~/.cache/R/SHARK4R/call_9c36445a2f9d87cbe5b321c578c3c759.rds’
  ‘~/.cache/R/SHARK4R/call_a385292681f0d6c055a1d7bcfdc4a84a.rds’
  ‘~/.cache/R/SHARK4R/call_c6c4c5f867f5ca895487573efaa4b50b.rds’
  ‘~/.cache/R/SHARK4R/codelist_SMHI.xlsx’
  ‘~/.cache/R/SHARK4R/delivery_Bacterioplankton.xlsx’
  ‘~/.cache/R/SHARK4R/delivery_Phytoplankton.xlsx’
  ‘~/.cache/R/SHARK4R/nomp_taxa_biovolumes_and_carbon_2023.zip’
  ‘~/.cache/R/SHARK4R/nomp_taxa_biovolumes_and_carbon_2024.zip’
  ‘~/.cache/R/SHARK4R/perm’ ‘~/.cache/R/SHARK4R/perm/land.gpkg’
  ‘~/.cache/R/SHARK4R/perm/statistics.rds’
* DONE

Status: 1 NOTE
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/SHARK4R.Rcheck/00check.log’
for details.

Time 9:01.29, 383.16 + 43.62