* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/RuHere.Rcheck’
* using R Under development (unstable) (2026-04-05 r89793)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* current time: 2026-04-06 03:15:38 UTC
* checking for file ‘RuHere/DESCRIPTION’ ... OK
* this is package ‘RuHere’ version ‘1.0.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RuHere’ can be installed ... [65s/66s] OK
* used C++ compiler: ‘g++ (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [53s/54s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [44s/44s] OK
* checking examples with --run-donttest ... [60s/67s] ERROR
Running examples in ‘RuHere-Ex.R’ failed
The error most likely occurred in:

> ### Name: faunabr_here
> ### Title: Download the latest version of the Fauna do Brazil (Taxonomic
> ###   Catalog of the Brazilian Fauna)
> ### Aliases: faunabr_here
> 
> ### ** Examples
> 
> ## No test: 
> # Define a directory to save the data
> data_dir <- tempdir() # Here, a temporary directory
> 
> # Download the latest version of the Flora e Funga do Brazil database
> faunabr_here(data_dir = data_dir)
Getting data from Taxonomic Catalog of the Brazilian Fauna ...
Data will be saved in /tmp/RtmplHgwZy/working_dir/Rtmp1jh5Dq/faunabr

Downloading version: 1.50

Merging data. Please wait a moment...

Data will be saved in /tmp/RtmplHgwZy/working_dir/Rtmp1jh5Dq/faunabr

Error in `[.data.frame`(df_final4, , c(c("id", "taxonID", "species", "subspecies",  : 
  undefined columns selected
Calls: faunabr_here -> <Anonymous> -> merge_data -> [ -> [.data.frame
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [125s/126s] OK
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/RuHere.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 9:24.33, 499.98 + 48.92