* using log directory ‘/data/localhost/ripley/R/packages/tests-donttest/ReliabilityTheory.Rcheck’
* using R Under development (unstable) (2026-08-22 r90441)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)
    GNU Fortran (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)
* running under: Fedora Linux 44 (Server Edition)
* using session charset: UTF-8
* current time: 2026-08-23 01:40:42 UTC
* checking for file ‘ReliabilityTheory/DESCRIPTION’ ... OK
* this is package ‘ReliabilityTheory’ version ‘0.3.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ReliabilityTheory’ can be installed ... [7s/16s] OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [12s/25s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [12s/28s] OK
* checking examples with --run-donttest ... [10m/22m] ERROR
Running examples in ‘ReliabilityTheory-Ex.R’ failed
The error most likely occurred in:

> ### Name: nonParBayesSystemInference
> ### Title: Non-parametric Bayesian posterior predictive system survival
> ###   inference
> ### Aliases: nonParBayesSystemInference
> ### Keywords: non parametric Bayesian inference survival signature test
> ###   data
> 
> ### ** Examples
> 
> ## Exactly reproduce the example in Section 4.1 of Aslett et al (2015), including Figure 5
> # First specify the system layout, numbered as per Figure 4
> sys <- createSystem(s -- 1 -- 2:4:5, 2 -- 3 -- t, 4:5 -- 6 -- t,
+                     s -- 7 -- 8 -- t, s -- 9 -- 10 -- 11 -- t, 7 -- 10 -- 8,
+                     types = list(T1 = c(1, 6, 11),
+                                  T2 = c(2, 3, 9),
+                                  T3 = c(4, 5, 10),
+                                  T4 = c(7, 8)))
> 
> # Compute the survival signature table from Appendix
> sig <- computeSystemSurvivalSignature(sys)
> 
> # Simulate the test data (same seed as used in the paper)
> set.seed(233)
> t1 <- rexp(100, rate=0.55)
> t2 <- rweibull(100, scale=1.8, shape=2.2)
> t3 <- rlnorm(100, 0.4, 0.9)
> t4 <- rgamma(100, scale=0.9, shape=3.2)
> 
> # Compile into a list as required by this function
> test.data <- list("T1"=t1, "T2"=t2, "T3"=t3, "T4"=t4)
> 
> # Create a vector of times at which to evaluate the posterior predictive
> # survival probability and compute using this function
> t <- seq(0, 5, length.out=300)
> yS <- nonParBayesSystemInference(t, sig, test.data)
> 
> # Compute the survival curves for the individual components (just to match
> # Figure 5)
> y1 <- sapply(t, pexp, rate=0.55, lower.tail=FALSE)
> y2 <- sapply(t, pweibull, scale=1.8, shape=2.2, lower.tail=FALSE)
> y3 <- sapply(t, plnorm, meanlog=0.4, sdlog=0.9, lower.tail=FALSE)
> y4 <- sapply(t, pgamma, scale=0.9, shape=3.2, lower.tail=FALSE)
> 
> # Plot
> ## No test: 
> library(ggplot2)
> p <- ggplot(data.frame(Time=rep(t,5), Probability=c(yS,y1,y2,y3,y4),
+             Item=c(rep(c("System", "T1", "T2", "T3", "T4"), each=300))))
> p <- p + geom_line(aes(x=Time, y=Probability, linetype=Item))
Warning in new_layer_names(object, names2(plot@layers)) :
  internal error 1 in R_decompress1 with libdeflate
Error in new_layer_names(object, names2(plot@layers)) : 
  lazy-load database '/data/localhost/ripley/R/test-dev/vctrs/R/vctrs.rdb' is corrupt
Calls: Ops.S7_object ... method(update_ggplot, list(new_S3_class("Layer"), ggplot2::ggplot)) -> new_layer_names
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [23s/45s]
 [23s/45s] OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... NOTE
Found the following files/directories:
  ‘/tmp/JzMBQzYWyO’ ‘/tmp/ase4wZx8jZ’
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/data/localhost/ripley/R/packages/tests-donttest/ReliabilityTheory.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 25:18.78, 668.50 + 11.87