* using log directory ‘/data/localhost/ripley/R/packages/tests-donttest/RWsearch.Rcheck’ * using R Under development (unstable) (2026-08-22 r90441) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2) GNU Fortran (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2) * running under: Fedora Linux 44 (Server Edition) * using session charset: UTF-8 * current time: 2026-08-23 01:08:22 UTC * checking for file ‘RWsearch/DESCRIPTION’ ... OK * this is package ‘RWsearch’ version ‘5.2.6’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘RWsearch’ can be installed ... [6s/12s] OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [11s/26s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [4s/12s] OK * checking examples with --run-donttest ... [4s/22s] ERROR Running examples in ‘RWsearch-Ex.R’ failed The error most likely occurred in: > ### Name: RWsearch-package > ### Title: Package RWsearch > ### Aliases: RWsearch-package RWsearch > > ### ** Examples > > ### THE W IN RWsearch: LAUNCH WEBSITES AND SEARCH ENGINES > if (interactive()) { + h_cranbydate(repos = "https://cloud.r-project.org") + h_yt("Serge Gainsbourg Ne dis rien") + h_osm("La Ferriere sous Jougne") + h_mw(recension) + h_lexilogos() + } > > ### A CONVENIENT FUNCTION FOR NON-STANDARD EVALUATION > ## Non-standard content (nsc1, nsc2), standard content ("stc3", "double word4") > ## and regular object (obj) stored in .GlobalEnv can be merged with cnsc() > obj <- c("obj5", "obj6") > cnsc(nsc1, nsc2, "stc3", "double word4", obj) [[1]] [1] "nsc1" [[2]] [1] "nsc2" [[3]] [1] "stc3" [[4]] [1] "double word4" [[5]] obj > > ### DOWNLOAD CRANDB, BINARYDB AND CHECKDB > ## In real life, download crandb, binarydb and checkdb from CRAN or load them > ## with functions crandb_down(), binarydb_down(), checkdb_down() or > ## crandb_load(), binarydb_load() and checkdb_load(). > ## checkdb can be ignored if less than npkgs are explored. > ## In this example, we use three small files. > crandb_load(system.file("data", "zcrandb.rda", package = "RWsearch")) $newfile [1] "crandb loaded. 94 packages listed between 2016-02-11 and 2024-09-20" > binarydb_load(system.file("data", "zbinarydb.rda", package = "RWsearch")) > checkdb_load(system.file("aabb", "zcheck_results.rds", package = "RWsearch")) checkdb loaded. 94 packages were checked on 13 architectures: OK NOTE WARNING ERROR FAILURE 880 328 12 2 0 > > ### PRINT THE LATEST PACKAGES UPLOADED ON CRAN (LAST DATE = "2024-09-20") > crandb_fromto(from = -30, to = max(crandb$Published)) [1] "abind" "boot" "jsonlite" "RobExtremes" "Signac" > crandb_fromto(from = "2024-01-01", to = Sys.Date()) [1] "abind" "boot" "BTSPAS" "canprot" [5] "ChainLadder" "CHNOSZ" "codetools" "CSTools" [9] "Delaporte" "FatTailsR" "fitdistrplus" "foreign" [13] "h2o" "htmltools" "igraph" "jsonlite" [17] "KernSmooth" "lattice" "MALDIquant" "MASS" [21] "Matrix" "nlme" "RcppHNSW" "RobExtremes" [25] "RWsearch" "searcher" "Seurat" "Signac" [29] "simPop" "sos" "spectralAnalysis" "survival" [33] "tensorflow" "XML" > > ### SEARCH IN CRANDB > ## Search in crandb. Use standard or non-standard content. > ## Display the results in a vector or in a list. > s_crandb(search, find, cran, web) [1] "bsearchtools" "cluster" "CRANsearcher" "FBFsearch" [5] "findR" "htmlwidgets" "jsonlite" "packagefinder" [9] "pdfsearch" "RWsearch" "searcher" "sig" [13] "sos" "tensorflow" "uptasticsearch" "VetResearchLMM" [17] "websearchr" "wfindr" > s_crandb(search, find, cran, web, select = "PD", mode = "and") [1] "CRANsearcher" "packagefinder" "RWsearch" > s_crandb("^f", select = "P") [1] "FatTailsR" "FBFsearch" "findR" "fitdistrplus" "fitur" [6] "foreign" > s_crandb(c("thermodynamic", "chemical reaction")) [1] "aiRthermo" "CHNOSZ" "IAPWS95" "renpow" [5] "RxnSim" "spectralAnalysis" > (lst <- s_crandb_list(thermodynamic, "chemical reaction")) $thermodynamic [1] "aiRthermo" "CHNOSZ" "IAPWS95" "renpow" $`chemical reaction` [1] "RxnSim" "spectralAnalysis" > p_vers(lst) $thermodynamic nsloaded version binary crandb difvb difbc compare gcc tdeps ndeps aiRthermo FALSE 1.2.2 1.2.1 1.2.1 1 0 1 yes 0 0 renpow FALSE 0.1-1 0.1-1 0.1-1 0 0 0 no 0 0 CHNOSZ FALSE 2.2.0 2.1.0 2.1.0 1 0 1 yes 4 0 IAPWS95 FALSE 1.2.5 1.2.4 1.2.4 1 0 1 yes 3 3 $`chemical reaction` nsloaded version binary crandb difvb difbc compare gcc tdeps RxnSim FALSE 1.0.4 1.0.4 1.0.4 0 0 0 no 5 spectralAnalysis FALSE 4.3.3 4.3.3 -2 0 -2 no 24 ndeps RxnSim 4 spectralAnalysis 17 > > ### DISPLAY THE RESULTS > ## in the console, in (txt, md, pdf) files or in the browser. > if (interactive()) { + p_table2(lst) + p_table7pdf(lst, dir = file.path(tempdir(), "ptable"), openpdf = TRUE) + p_text(lst, dir = file.path(tempdir(), "ptext1"), pager = TRUE, + repos = "https://cloud.r-project.org") + p_text2pdf(lst, dir = file.path(tempdir(), "ptext1"), openpdf = TRUE, + repos = "https://cloud.r-project.org") + p_display(lst, dir = file.path(tempdir(), "pdisp1")) + } > > ### VISUALIZE THE DOCUMENTATION (IN A BROWSER) > ## from the installed packages on your computer > ## or from the packages listed in https://search.r-project.org > if (interactive()) { + p_html(brew, sig) + p_man(foghorn) + p_pdfweb(sos, repos = "https://cloud.r-project.org") + } > > ### VISUALIZE THE PACKAGE DEPENDENCIES AND THE PACKAGE STATUS > if (interactive()) { + p_graphF(actuar, fitdistrplus, reverse = TRUE) # Children + p_graphF(RWsearch) # Parents + p_vers(RWsearch) # Installed versions + p_vers_deps(RWsearch) # Installed versions + } > > ### VISUALIZE THE PACKAGE CHECKS (USE checkdb FOR FASTER RESULTS) > if (interactive()) { + p_check(RWsearch, repos = "https://cloud.r-project.org") + res <- p_checkdeps_lst(RWsearch, repos = "https://cloud.r-project.org") + head(res, 3) + } > > ### DOWNLOAD THE DOCUMENTATION > ## Vector => download in the "docpkgs" directory ("." is the current directory) > ## List => download in subdirectories named after the keywords > ## (non-standard content is accepted) > ## No test: > p_down(pacman, pdfsearch, sos, dir = file.path(tempdir(), "pdown"), + repos = "https://cloud.r-project.org") > p_down(lst, dir = file.path(tempdir(), "pdown"), repos = "https://cloud.r-project.org") > ## End(No test) > > ### SEARCH WITH sos (ON R-PROJECT HELP PAGES), rdrr AND rdoc > if (interactive()) { + (res <- s_sos(aluminium)) + head(data.frame(res), 3) + tail(data.frame(res), 3) + h_rdrr(aluminium) + h_rdoc(distillation) + } > > ### TASK VIEW MAINTENANCE > ## In real life, download crandb and tvdb from CRAN or load them from your directory > ## with functions crandb_down(), tvdb_down(), crandb_load(), tvdb_load(). > ## In this example, we use small files. > crandb_load(system.file("data", "zcrandb.rda", package = "RWsearch")) $newfile [1] "crandb loaded. 94 packages listed between 2016-02-11 and 2024-09-20" > tvdb_load(system.file("data", "ztvdb.rda", package = "RWsearch")) tvdb loaded. 4 task views listed between 2023-07-01 and 2024-09-25 > > ## List the task views > tvdb_vec() [1] "ChemPhys" "Distributions" "Finance" "Robust" > tvdb_pkgs(ChemPhys, Robust) $ChemPhys [1] "AeroSampleR" "albatross" "ALS" [4] "AquaEnv" "astrodatR" "astroFns" [7] "Bchron" "BioMark" "bvls" [10] "celestial" "chemCal" "chemometrics" [13] "ChemoSpec" "ChemoSpec2D" "CHNOSZ" [16] "chromConverter" "clustvarsel" "compositions" [19] "constants" "cosmoFns" "data.table" [22] "drc" "eChem" "elasticnet" [25] "enpls" "enviPat" "errors" [28] "fastICA" "fingerprint" "FITSio" [31] "GCalignR" "HaDeX" "homals" [34] "IAPWS95" "investr" "Iso" [37] "ISRaD" "kohonen" "LCMSQA" [40] "leaps" "LearnPCA" "lira" [43] "lorentz" "lspls" "MALDIquant" [46] "MALDIquantForeign" "mdatools" "measurements" [49] "metRology" "minpack.lm" "MSbox" [52] "nimbleCarbon" "NIRStat" "NISTunits" [55] "nlme" "nlreg" "nnls" [58] "OrgMassSpecR" "panstarrs" "pcaPP" [61] "pcv" "pls" "psy" [64] "PTAk" "quantities" "RadData" [67] "radsafer" "RaMS" "rcarbon" [70] "rcdk" "rcdklibs" "readBrukerFlexData" [73] "readMzXmlData" "RGCxGC" "RobPer" [76] "RpeakChrom" "SCEPtER" "SCEPtERbinary" [79] "serrsBayes" "simecol" "snapshot" [82] "solaR" "som" "SPADAR" [85] "spDates" "speaq" "spectralAnalysis" [88] "spectrino" "spls" "standartox" [91] "stellaR" "stepPlr" "tidyverse" [94] "TIMP" "titrationCurves" "units" [97] "varSelRF" "webchem" $Robust [1] "clubSandwich" "cluster" "clusterSEs" "complmrob" "covRobust" [6] "coxrobust" "distr" "drgee" "genie" "GJRM" [11] "Gmedian" "GSE" "lqmm" "MASS" "mblm" [16] "metaplus" "mvoutlier" "otrimle" "pcaPP" "quantreg" [21] "RandVar" "revss" "rlme" "RobAStBase" "robcor" [26] "robfilter" "RobLox" "RobLoxBioC" "RobPer" "RobStatTM" [31] "robsurvey" "robumeta" "robust" "RobustAFT" "robustbase" [36] "robustDA" "robustlmm" "robustreg" "robustX" "ROptEst" [41] "rospca" "rpca" "rrcov" "rrcovHD" "rrcovNA" [46] "RSKC" "sandwich" "skewlmm" "ssmrob" "tclust" [51] "walrus" "WRS2" > > ## Search for some packages in the task views > s_tvdb(actuar, FatTailsR, MASS, zoo, nopackage) $actuar Distributions Finance TRUE TRUE $FatTailsR Distributions Finance TRUE TRUE $MASS Distributions Robust TRUE TRUE $zoo Finance TRUE $nopackage named logical(0) > > ## Search for recent packages in crandb that contain the keyword > ## and verify if the packages are already referred in the task view. > ## from = "2024-01-01" and "2018-01-01" are selected for this small example. > s_crandb_tvdb("distribution", tv = "Distributions", from = "2024-01-01") $spkgs [1] "Delaporte" "FatTailsR" "fitdistrplus" "RobExtremes" $inTV [1] "Delaporte" "FatTailsR" "fitdistrplus" $notinTV [1] "RobExtremes" $inTV_in [1] "Delaporte" "FatTailsR" "fitdistrplus" $inTV_un character(0) $notinTV_in [1] "RobExtremes" $notinTV_un character(0) > s_crandb_tvdb("distribution", tv = "Distributions", from = "2018-01-01") $spkgs [1] "actuar" "Delaporte" "earlyR" "FatTailsR" "fitdistrplus" [6] "fitur" "mbbefd" "mgcv" "PredictionR" "RobExtremes" [11] "ssdtools" "stratifyR" "vsgoftest" $inTV [1] "actuar" "Delaporte" "FatTailsR" "fitdistrplus" "mbbefd" $notinTV [1] "earlyR" "fitur" "mgcv" "PredictionR" "RobExtremes" [6] "ssdtools" "stratifyR" "vsgoftest" $inTV_in [1] "actuar" "Delaporte" "FatTailsR" "fitdistrplus" "mbbefd" $inTV_un character(0) $notinTV_in [1] "earlyR" "fitur" "mgcv" "PredictionR" "RobExtremes" [6] "ssdtools" "stratifyR" "vsgoftest" $notinTV_un character(0) > > ### EXPLORE CRAN ARCHIVE AND DOWNLOAD OLD tar.gz FILES > ## In real life, download archivedb and crandb from CRAN > ## with the functions archivedb_down() and crandb_down(). > ## In this example, we load two small files (94 and 85 packages). > crandb_load(system.file("data", "zcrandb.rda", package = "RWsearch")) $newfile [1] "crandb loaded. 94 packages listed between 2016-02-11 and 2024-09-20" > archivedb_load(system.file("aabb", "zCRAN-archive.html", package = "RWsearch")) archivedb loaded in .GlobalEnv. 85 listed. > archivedb_npkgs() pcrandb parchivedb pfirst pupdated premoved 94 85 9 85 0 > lapply(archivedb_list(), tail) $pkgs_crandb [1] "visNetwork" "vsgoftest" "websearchr" "wfindr" "XML" [6] "zoo" $pkgs_archivedb [1] "univariateML" "uptasticsearch" "visNetwork" "vsgoftest" [5] "websearchr" "zoo" $pkgs_first [1] "CompDist" "CRANsearcher" "musica" "renpow" [5] "titrationCurves" "wfindr" $pkgs_updated [1] "VetResearchLMM" "visNetwork" "vsgoftest" "websearchr" [5] "XML" "zoo" $pkgs_removed character(0) $dfr_crandb Package Published 89 visNetwork 2022-09-29 90 vsgoftest 2020-12-17 91 websearchr 2018-10-23 92 wfindr 2016-07-03 93 XML 2024-06-25 94 zoo 2023-04-13 $dfr_archivedb Package Archived 80 univariateML 2022-01-25 81 uptasticsearch 2019-09-11 82 visNetwork 2022-09-29 83 vsgoftest 2020-12-17 84 websearchr 2018-10-23 85 zoo 2023-04-13 $dfr_first Package Published 21 CompDist 2017-08-17 23 CRANsearcher 2017-06-26 52 musica 2016-09-03 64 renpow 2018-05-16 85 titrationCurves 2016-02-11 92 wfindr 2016-07-03 $dfr_updated Package Published 88 VetResearchLMM 2018-04-22 89 visNetwork 2022-09-29 90 vsgoftest 2020-12-17 91 websearchr 2018-10-23 93 XML 2024-06-25 94 zoo 2023-04-13 $dfr_removed [1] Package Archived <0 rows> (or 0-length row.names) $npkgs pcrandb parchivedb pfirst pupdated premoved 94 85 9 85 0 > > ## Download the latest tar.gz version from CRAN archive > ## (this works for both both existing and removed packages). > ## No test: > p_vers(fitur, zmatrix) # zmatrix is an archived package nsloaded version binary crandb difvb difbc compare gcc tdeps ndeps zmatrix FALSE -3 -3 -3 0 0 fitur FALSE 0.6.2 0.6.2 0.6.2 0 0 0 no 22 11 > p_downarch(fitur, zmatrix, dir = file.path(tempdir(), "pdownarch")) Error in targz_down(ptargz, dir = dir, untar = untar, url = url) : tar.gz extension is missing. Calls: p_downarch -> targz_down Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [9s/19s] OK * checking PDF version of manual ... [5s/10s] OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * checking for new files in some other directories ... OK * DONE Status: 1 ERROR See ‘/data/localhost/ripley/R/packages/tests-donttest/RWsearch.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 2:48.35, 59.07 + 10.62