* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/RMark.Rcheck’
* using R Under development (unstable) (2024-03-16 r86144)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 13.2.1 20231011 (Red Hat 13.2.1-4)
    GNU Fortran (GCC) 13.2.1 20231011 (Red Hat 13.2.1-4)
* running under: Fedora Linux 38 (Workstation Edition)
* using session charset: UTF-8
* checking for file ‘RMark/DESCRIPTION’ ... OK
* this is package ‘RMark’ version ‘3.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RMark’ can be installed ... [20s/20s] OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [44s/45s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking examples with --run-donttest ... [36s/22s] ERROR
Running examples in ‘RMark-Ex.R’ failed
The error most likely occurred in:

> ### Name: NSpeciesOcc
> ### Title: Multiple Species Occupancy
> ### Aliases: NSpeciesOcc
> ### Keywords: datasets
> 
> ### ** Examples
> 
> ## No test: 
> # read in expected value data from Gary White
> data("NSpeciesOcc")
> # process data and specify number of species=5 in the mixtures argument
> dp=process.data(NSpeciesOcc,model="NSpeciesOcc",mixtures=5)
> # make design data and fit model used to generate the data
> ddl=make.design.data(dp)
> model=mark(dp,ddl,model.parameters=list(f=list(formula=~-1+mixture,link="sin"),
+ p=list(formula=~1,link="sin")),delete=TRUE)
STOP ERROR
  INPUT --- proc title ;

     CPU Time in seconds for last procedure was 0.00
  INPUT --- proc chmatrix occasions= 4 groups= 1 etype= NSpeciesOcc 
  INPUT --- Nodes= 101 mixtures = 5  ICMeans NoHist hist= 32 ;
  INPUT ---    time interval 1 1 1 1 ;
  INPUT ---    glabel(1)=Group 1;
 ERROR -- Animal was never released: 00000000
MARK did not run properly.  If error message was not shown, look at most recent .out file

Model output is not available in R. Check contents of mark001.out

Error in matrix(real[model$pims[[parameter]][[j]]$pim], nrow = dim(model$pims[[parameter]][[j]]$pim)[1]) : 
  'data' must be of a vector type, was 'NULL'
Calls: mark ... print -> summary -> summary.mark -> get.real -> matrix
Execution halted
* checking PDF version of manual ... [13s/13s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/RMark.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 2:50.35, 170.74 + 12.74