* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/RFCCA.Rcheck’
* using R Under development (unstable) (2024-12-24 r87459)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 13.2.1 20240316 (Red Hat 13.2.1-7)
    GNU Fortran (GCC) 13.2.1 20240316 (Red Hat 13.2.1-7)
* running under: Fedora Linux 38 (Workstation Edition)
* using session charset: UTF-8
* checking for file ‘RFCCA/DESCRIPTION’ ... OK
* this is package ‘RFCCA’ version ‘2.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RFCCA’ can be installed ... [32s/32s] OK
* used C compiler: ‘gcc (GCC) 13.2.1 20240316 (Red Hat 13.2.1-7)’
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [36s/37s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking compilation flags used ... OK
* checking compiled code ... NOTE
File ‘RFCCA/libs/RFCCA.so’:
  Found non-API call to R: ‘STRING_PTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking examples with --run-donttest ... ERROR
Running examples in ‘RFCCA-Ex.R’ failed
The error most likely occurred in:

> ### Name: global.significance
> ### Title: Global significance test
> ### Aliases: global.significance
> 
> ### ** Examples
> 
> ## No test: 
> ## load generated example data
> data(data, package = "RFCCA")
> set.seed(2345)
> 
> global.significance(X = data$X, Y = data$Y, Z = data$Z, ntree = 40,
+   nperm = 5)

 *** caught segfault ***
address 0x1, cause 'memory not mapped'

Traceback:
 1: doTryCatch(return(expr), name, parentenv, handler)
 2: tryCatchOne(expr, names, parentenv, handlers[[1L]])
 3: tryCatchList(expr, classes, parentenv, handlers)
 4: tryCatch({    .Call("rfsrcGrow", as.integer(do.trace), as.integer(seed),         as.integer(ensemble.bits + impute.only.bits + var.used.bits +             split.depth.bits + importance.bits + bootstrap.bits +             forest.bits + proximity.bits + perf.bits + rfq.bits +             gk.quantile.bits + statistics.bits + empirical.risk.bits),         as.integer(samptype.bits + forest.wt.bits + distance.bits +             na.action.bits + split.cust.bits + membership.bits +             terminal.qualts.bits + terminal.quants.bits), as.integer(splitinfo$index),         as.integer(splitinfo$nsplit), as.integer(mtry), lot,         base.learner, as.integer(vtry), as.integer(holdout.array),         holdout.specs, as.integer(formulaDetail$ytry), as.integer(nodesize),         as.integer(nodedepth), as.integer(length(cause.wt)),         as.double(cause.wt), as.integer(ntree), as.integer(n),         as.integer(length(yvar.types)), as.character(yvar.types),         as.integer(yvar.nlevels), as.double(as.vector(yvar)),         as.integer(all.names(formula, max.names = 1e+07)[2] ==             "cca"), as.integer(n.mvdata1), as.integer(n.mvdata2),         as.double(ccavar), as.integer(n.xvar), as.character(xvar.types),         as.integer(xvar.nlevels), as.integer(sampsize), as.integer(samp),         as.double(case.wt), as.double(split.wt), as.double(yvar.wt),         as.double(xvar.wt), as.double(xvar), as.integer(length(event.info$time.interest)),         as.double(event.info$time.interest), as.integer(nimpute),         as.integer(block.size), as.integer(length(prob)), as.double(prob),         as.double(prob.epsilon), as.double(NULL), as.integer(get.rf.cores()))}, error = function(e) {    print(e)    NULL})
 5: rfsrc(formula = formula, data = rfsrcdata, mvdata1 = xvar, mvdata2 = yvar,     ntree = ntree, mtry = mtry, nodesize = nodesize, nodedepth = nodedepth,     splitrule = "custom2", nsplit = nsplit, membership = TRUE,     importance = FALSE, forest = TRUE, bootstrap = (if (bootstrap) {        "by.root"    } else {        "none"    }), samptype = samptype, sampsize = sampsize, var.used = var.used,     split.depth = split.depth, do.trace = do.trace, statistics = statistics,     seed = seed)
 6: rfcca(X = xvar, Y = yvar, Z = zvar, ntree = ntree, mtry = mtry,     nodesize = nodesize, nodedepth = nodedepth, splitrule = "custom2",     nsplit = nsplit, Xcenter = Xcenter, Ycenter = Ycenter)
 7: global.significance(X = data$X, Y = data$Y, Z = data$Z, ntree = 40,     nperm = 5)
An irrecoverable exception occurred. R is aborting now ...
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/RFCCA.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 1:44.74, 92.88 + 10.11