* using log directory ‘/data/localhost/ripley/R/packages/tests-donttest/PsyMetricTools.Rcheck’ * using R Under development (unstable) (2026-08-22 r90441) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2) GNU Fortran (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2) * running under: Fedora Linux 44 (Server Edition) * using session charset: UTF-8 * current time: 2026-08-22 23:50:13 UTC * checking for file ‘PsyMetricTools/DESCRIPTION’ ... OK * this is package ‘PsyMetricTools’ version ‘1.2.2’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘PsyMetricTools’ can be installed ... [10s/17s] OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [22s/49s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... OK * checking examples with --run-donttest ... [6m/13m] ERROR Running examples in ‘PsyMetricTools-Ex.R’ failed The error most likely occurred in: > ### Name: EFA_plot > ### Title: Plot EFA Factor Loadings > ### Aliases: EFA_plot > > ### ** Examples > > ## No test: > # Example 1: Using with EFA_modern() result > set.seed(123) > n <- 300 > data_efa <- data.frame( + Item1 = sample(1:5, n, replace = TRUE), + Item2 = sample(1:5, n, replace = TRUE), + Item3 = sample(1:5, n, replace = TRUE), + Item4 = sample(1:5, n, replace = TRUE), + Item5 = sample(1:5, n, replace = TRUE), + Item6 = sample(1:5, n, replace = TRUE), + Item7 = sample(1:5, n, replace = TRUE), + Item8 = sample(1:5, n, replace = TRUE), + Item9 = sample(1:5, n, replace = TRUE) + ) > > # First run EFA > efa_result <- EFA_modern( + n_factors = 3, + n_items = 9, + name_items = "Item", + data = data_efa, + apply_threshold = TRUE + ) Warning: lavaan->lav_test_sb(): could not invert information matrix needed for robust test statistic Warning: lavaan->lav_model_vcov(): Could not compute standard errors! The information matrix could not be inverted. This may be a symptom that the model is not identified. Warning: lavaan->lav_model_vcov(): Could not compute standard errors! The information matrix could not be inverted. This may be a symptom that the model is not identified. Warning: lavaan->lav_object_post_check(): some estimated ov variances are negative Warning: lavaan->lav_step11_estoptim(): the optimizer (NLMINB) claimed the model converged, but not all elements of the gradient are (near) zero; the optimizer may not have found a local solution use check.gradient = FALSE to skip this check. Warning: lavaan->lav_model_vcov(): The variance-covariance matrix of the estimated parameters (vcov) does not appear to be positive definite! The smallest eigenvalue (= 1.568774e-15) is close to zero. This may be a symptom that the model is not identified. Warning: lavaan->lav_step11_estoptim(): the optimizer warns that a solution has NOT been found! Warning: lavaan->lav_object_post_check(): some estimated ov variances are negative Warning: lavaan->lav_object_post_check(): some estimated ov variances are negative Error: lavaan->lav_fit(): fit measures not available if model did not converge Execution halted * checking PDF version of manual ... [6s/16s] OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * checking for new files in some other directories ... NOTE Found the following files/directories: ‘~/.cache/R/Require’ ‘~/.cache/R/Require/README’ ‘~/.cache/R/Require/packages’ ‘~/.cache/R/Require/packages/4.7’ * DONE Status: 1 ERROR, 1 NOTE See ‘/data/localhost/ripley/R/packages/tests-donttest/PsyMetricTools.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 16:36.97, 424.46 + 13.58