* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/PanelSelect.Rcheck’
* using R Under development (unstable) (2025-12-20 r89211)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* checking for file ‘PanelSelect/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘PanelSelect’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PanelSelect’ can be installed ... [22s/22s] OK
* used C++ compiler: ‘g++ (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [16s/16s] OK
* checking examples with --run-donttest ... ERROR
Running examples in ‘PanelSelect-Ex.R’ failed
The error most likely occurred in:

> ### Name: probitRE_PLNRE
> ### Title: Poisson Lognormal Model with Random Effects and Sample Selection
> ### Aliases: probitRE_PLNRE
> 
> ### ** Examples
> 
> ## No test: 
> library(MASS)
> library(PanelSelect)
> set.seed(1)
> N = 500
> periods = 5
> rho = 0.5
> tau = 0
> 
> id = rep(1:N, each=periods)
> time = rep(1:periods, N)
> x = rnorm(N*periods)
> w = rnorm(N*periods)
> 
> # correlated random effects at the individual level
> r = mvrnorm(N, mu=c(0,0), Sigma=matrix(c(1,rho,rho,1), nrow=2))
> r1 = rep(r[,1], each=periods)
> r2 = rep(r[,2], each=periods)
> 
> # correlated error terms at the individual-time level
> e = mvrnorm(N*periods, mu=c(0,0), Sigma=matrix(c(1,tau,tau,1), nrow=2))
> e1 = e[,1]
> e2 = e[,2]
> 
> # selection
> z = as.numeric(1+x+w+r1+e1>0)
> # outcome
> y = rpois(N*periods, exp(-1+x+r2+e2))
> y[z==0] = NA
> dt = data.frame(id,time,x,w,z,y)
> 
> # As N increases, the parameter estimates will be more accurate
> m = probitRE_PLNRE(z~x+w, y~x, data=sim, id.name='id', verbose=-1)
Error: object 'sim' not found
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [23s/23s] OK
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/PanelSelect.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 1:41.52, 84.11 + 16.78