* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/OmopOnSpark.Rcheck’ * using R Under development (unstable) (2025-12-10 r89137) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) * running under: Fedora Linux 40 (Workstation Edition) * using session charset: UTF-8 * checking for file ‘OmopOnSpark/DESCRIPTION’ ... OK * this is package ‘OmopOnSpark’ version ‘0.1.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘OmopOnSpark’ can be installed ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking examples with --run-donttest ... ERROR Running examples in ‘OmopOnSpark-Ex.R’ failed The error most likely occurred in: > ### Name: mockSparkCdm > ### Title: creates a cdm reference to local spark OMOP CDM tables > ### Aliases: mockSparkCdm > > ### ** Examples > > ## No test: > if(sparklyr::spark_installed_versions() |> nrow() == 0){ + folder <- file.path(tempdir(), "temp_spark") + cdm <- mockSparkCdm(path = folder) + cdm + } Warning in spark_install_find(version, hadoop_version, latest = FALSE) : The Spark version specified may not be available. Please consider running `spark_available_versions()` to list all known available Spark versions. Error in if (file.exists(versionedFile)) { : argument is of length zero Calls: mockSparkCdm ... validate_java_version -> spark_version_from_home -> versionAttempt Execution halted * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [13s/13s] OK * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * checking for new files in some other directories ... OK * DONE Status: 1 ERROR See ‘/data/blackswan/ripley/R/packages/tests-devel/OmopOnSpark.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 1:02.25, 46.13 + 15.78