* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/NMADTA.Rcheck’
* using R Under development (unstable) (2025-11-16 r89026)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* checking for file ‘NMADTA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘NMADTA’ version ‘0.1.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘NMADTA’ can be installed ... [19s/20s] OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [33s/34s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [29s/30s] OK
* checking examples with --run-donttest ... [30m/31m] ERROR
Running examples in ‘NMADTA-Ex.R’ failed
The error most likely occurred in:

> ### Name: nmadt.hsroc
> ### Title: HSROC Model for Network Meta-Analysis of Diagnostic Accuracy
> ###   Studies
> ### Aliases: nmadt.hsroc
> ### Keywords: Test
> 
> ### ** Examples
> 
> ## No test: 
> data(dat.kang)
> set.seed(9)
> kang.out.hsroc <- nmadt.hsroc(nstu=12, K=2, data=dat.kang, testname=c("D-dimer","Ultrasonography"))
Start running MCMC...

Compiling data graph
   Resolving undeclared variables
   Allocating nodes
   Initializing
   Reading data back into data table
Compiling model graph
   Resolving undeclared variables
   Allocating nodes
Graph information:
   Observed stochastic nodes: 48
   Unobserved stochastic nodes: 38
   Total graph size: 2231

Initializing model

Warning in jags.model(model, data = data.jags, inits = init, n.chains = n.chains,  :
  Adaptation incomplete
NOTE: Stopping adaptation


* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [133s/135s]
 [134s/135s] OK
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/NMADTA.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 36:04.03, 2079.92 + 23.20