* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/MVNBayesian.Rcheck’
* using R Under development (unstable) (2024-03-16 r86144)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 13.2.1 20231011 (Red Hat 13.2.1-4)
    GNU Fortran (GCC) 13.2.1 20231011 (Red Hat 13.2.1-4)
* running under: Fedora Linux 38 (Workstation Edition)
* using session charset: UTF-8
* checking for file ‘MVNBayesian/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MVNBayesian’ version ‘0.0.8-11’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MVNBayesian’ can be installed ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [23s/24s] OK
* checking examples with --run-donttest ... [12s/12s] ERROR
Running examples in ‘MVNBayesian-Ex.R’ failed
The error most likely occurred in:

> ### Name: MVN_BayesianIterator
> ### Title: Parameter estimation using Bayesian iteration
> ### Aliases: MVN_BayesianIterator
> ### Keywords: MVN distribution Bayesian posteriori Gibbs sampling
> 
> ### ** Examples
> 
> library(mvtnorm)
> 
> # Bayesian posteriori before iteration using dataset1 as example,
> # c(80, 16, 3) as priori mean:
> # View 2-norm of covariance matrix of Bayesian posteriori:
> BPos_init <- MVN_BayesianPosteriori(dataset1, c(80,16,3))
> BPos_init
$mean
         [,1]
fac1 77.90837
fac2 14.01146
fac3  4.12498

$var
           fac1        fac2        fac3
fac1  0.5344668 -0.28698530 -0.18252696
fac2 -0.2869853  0.27097011 -0.02952175
fac3 -0.1825270 -0.02952175  0.20718560

> norm(as.matrix(BPos_init$var), type = "2")
[1] 0.754647
> 
> # Bayesian posteriori after iteration using c(80,16,3) as priori
> # Using 30 last samples generated by GibbsSampler for each step:
> BPos_fina1 <- MVN_BayesianIterator(dataset1, c(80,16,3), 5000, 30)
[1] "Finish at the 1 step(s) in iteration."
> BPos_fina1
$mean
          [,1]
fac1 78.150751
fac2 13.953245
fac3  3.949264

$var
              fac1          fac2          fac3
fac1  3.653455e-04 -5.056149e-05 -0.0002480831
fac2 -5.056149e-05  2.788208e-04 -0.0002846714
fac3 -2.480831e-04 -2.846714e-04  0.0008041804

> norm(as.matrix(BPos_fina1$var), type = "2")
[1] 0.0009992176
> ## No test: 
> # Too small pseudo_nums setting can results in singular system, try:
> MVN_BayesianIterator(dataset1, pseudo_nums=3)
Warning in MVN_BayesianPosteriori(pseudo_data, colMeans(pseudo_data), var(pseudo_data)) :
  Caustion: No enough data for Bayesian Posteriori.
Error in data_BayesP$mean : $ operator is invalid for atomic vectors
Calls: MVN_BayesianIterator
Execution halted
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/MVNBayesian.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 1:10.75, 61.10 + 6.95