* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/LMMELSM.Rcheck’
* using R Under development (unstable) (2025-11-16 r89026)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* checking for file ‘LMMELSM/DESCRIPTION’ ... OK
* this is package ‘LMMELSM’ version ‘0.2.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘LMMELSM’ can be installed ... [594s/352s] OK
* used C++ compiler: ‘g++ (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
* checking C++ specification ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
  ‘RcppParallel’ ‘rstantools’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [34s/34s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... INFO
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... OK
* checking examples with --run-donttest ... [60m/32m] ERROR
Running examples in ‘LMMELSM-Ex.R’ failed
The error most likely occurred in:

> ### Name: lmmelsm
> ### Title: Specify and fit the (latent) (multivariate) melsm.
> ### Aliases: lmmelsm
> 
> ### ** Examples
> 
> ## No test: 
> data(sim_data)
> 
> # Fit LMMELSM with two latent factors (A and B),
> # Location model with one random coefficient
> # Scale model with one random coefficient
> # Between-group scale model with one covariate
> fit <- lmmelsm(list(A ~ A_1 + A_2 + A_3 + A_4 + A_5 + A_6,
+                     B ~ N_1 + N_2 + N_3 + N_4 + N_5 + N_6,
+                     location ~ x1 + baseline | x1,
+                     scale ~ x2 + baseline | x2,
+                     between ~ baseline),
+                subject, sim_data, cores = 2, iter = 500, chains = 2
+               )

SAMPLING FOR MODEL 'lmmelsmPred' NOW (CHAIN 2).

SAMPLING FOR MODEL 'lmmelsmPred' NOW (CHAIN 1).
Chain 2: 
Chain 2: Gradient evaluation took 0.038936 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 389.36 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2: 
Chain 2: 
Chain 1: 
Chain 1: Gradient evaluation took 0.041706 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 417.06 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 2: Iteration:   1 / 500 [  0%]  (Warmup)
Chain 1: Iteration:   1 / 500 [  0%]  (Warmup)
Chain 2: Iteration:  50 / 500 [ 10%]  (Warmup)
Chain 1: Iteration:  50 / 500 [ 10%]  (Warmup)
Error in x@mode : 
  no applicable method for `@` applied to an object of class "NULL"
Calls: lmmelsm
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [364s/374s]
 [365s/374s] OK
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/LMMELSM.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 46:41.51, 4659.39 + 65.91