* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/LDheatmap.Rcheck’
* using R Under development (unstable) (2023-01-04 r83564)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2)
    GNU Fortran (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2)
* running under: Fedora 34 (Workstation Edition)
* using session charset: UTF-8
* checking for file ‘LDheatmap/DESCRIPTION’ ... OK
* this is package ‘LDheatmap’ version ‘1.0-6’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘LDheatmap’ can be installed ... [13s/13s] OK
* used C++ compiler: ‘g++ (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2)’
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking examples with --run-donttest ... [12s/125s] ERROR
Running examples in ‘LDheatmap-Ex.R’ failed
The error most likely occurred in:

> ### Name: LDheatmap.addRecombRate
> ### Title: Add recombination rate plot to an LD heat map.
> ### Aliases: LDheatmap.addRecombRate
> ### Keywords: hplot
> 
> ### ** Examples
> 
> ## No test: 
> data(GIMAP5.CEU) 
> ll<-LDheatmap(GIMAP5.CEU$snp.data,GIMAP5.CEU$snp.support$Position,flip=TRUE)
> # Add recombination rate plot
> ll_recomb <- LDheatmap.addRecombRate(ll, chr="chr7", genome="hg18")
Error in function (type, msg, asError = TRUE)  : 
  Recv failure: Connection reset by peer
Calls: LDheatmap.addRecombRate ... httpGet -> getURL -> curlPerform -> <Anonymous> -> fun
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [12s/12s] OK
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/LDheatmap.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 3:12.60, 69.55 + 8.73