* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/HDiR.Rcheck’ * using R Under development (unstable) (2026-06-16 r90166) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) * running under: Fedora Linux 40 (Workstation Edition) * using session charset: UTF-8 * current time: 2026-06-17 09:07:56 UTC * checking for file ‘HDiR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HDiR’ version ‘1.1.3’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HDiR’ can be installed ... [15s/16s] OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [23s/24s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking examples ... [12s/12s] OK * checking examples with --run-donttest ... [556s/559s] ERROR Running examples in ‘HDiR-Ex.R’ failed The error most likely occurred in: > ### Name: sphere.plugin.hdr > ### Title: Spherical plug-in estimation of HDRs > ### Aliases: sphere.plugin.hdr > > ### ** Examples > > ## No test: > # Plug-in HDR estimator for spherical model 9 in HDiR package > set.seed(1) > sample=rspheremix(1000, model =9) > sphere.plugin.hdr(sample,tau=0.8,col="red") $hdr x y z [1,] -0.1460130808 -0.029826185 0.988832938 [2,] -0.1456202340 -0.031688618 0.988832938 [3,] -0.1452036325 -0.033545881 0.988832938 [4,] -0.1447633441 -0.035397673 0.988832938 [5,] -0.1442994408 -0.037243690 0.988832938 [6,] -0.1438119981 -0.039083631 0.988832938 [7,] -0.1433010957 -0.040917197 0.988832938 [8,] -0.1427668167 -0.042744088 0.988832938 [9,] -0.1422092485 -0.044564007 0.988832938 [10,] -0.1416284819 -0.046376655 0.988832938 [11,] -0.1410246117 -0.048181739 0.988832938 [12,] -0.1403977363 -0.049978962 0.988832938 [13,] -0.1397479582 -0.051768033 0.988832938 [14,] -0.1390753832 -0.053548659 0.988832938 [15,] -0.1383801210 -0.055320549 0.988832938 [16,] -0.1376622852 -0.057083415 0.988832938 [17,] -0.1397787538 -0.066518825 0.987945923 [18,] -0.1389177805 -0.068298641 0.987945923 [19,] -0.1380341458 -0.070067315 0.987945923 [20,] -0.1371279938 -0.071824560 0.987945923 [21,] -0.1361994724 -0.073570088 0.987945923 [22,] -0.1352487329 -0.075303614 0.987945923 [23,] -0.1342759306 -0.077024857 0.987945923 [24,] -0.1332812241 -0.078733534 0.987945923 [25,] -0.1322647756 -0.080429368 0.987945923 [26,] -0.1312267510 -0.082112081 0.987945923 [27,] -0.1301673196 -0.083781400 0.987945923 [28,] -0.1304017340 -0.093683469 0.987025225 [29,] -0.1291945812 -0.095341306 0.987025225 [30,] -0.1279663531 -0.096983591 0.987025225 [31,] -0.1267172501 -0.098610056 0.987025225 [32,] -0.1254474759 -0.100220434 0.987025225 [33,] -0.1241572376 -0.101814463 0.987025225 [34,] -0.1228467458 -0.103391883 0.987025225 [35,] -0.1215162142 -0.104952438 0.987025225 [36,] -0.1201658599 -0.106495871 0.987025225 [37,] -0.1187959031 -0.108021933 0.987025225 [38,] -0.1174065674 -0.109530372 0.987025225 [39,] -0.1171829918 -0.118035464 0.986070878 [40,] -0.1156658957 -0.119522487 0.986070878 [41,] -0.1141299313 -0.120990013 0.986070878 [42,] -0.1125753490 -0.122437801 0.986070878 [43,] -0.1110024024 -0.123865617 0.986070878 [44,] -0.1094113483 -0.125273226 0.986070878 [45,] -0.1078024460 -0.126660400 0.986070878 [46,] -0.1061759581 -0.128026912 0.986070878 [47,] -0.1045321500 -0.129372540 0.986070878 [48,] -0.1028712896 -0.130697062 0.986070878 [49,] -0.1011936481 -0.132000265 0.986070878 [50,] -0.0994994990 -0.133281934 0.986070878 [51,] -0.0977891187 -0.134541862 0.986070878 [52,] -0.0960627862 -0.135779842 0.986070878 [53,] -0.0943207832 -0.136995672 0.986070878 [54,] -0.0925633938 -0.138189155 0.986070878 [55,] -0.0907909047 -0.139360095 0.986070878 [56,] -0.0890036050 -0.140508301 0.986070878 [57,] -0.0872017863 -0.141633586 0.986070878 [58,] -0.0853857425 -0.142735768 0.986070878 [59,] -0.0835557699 -0.143814664 0.986070878 [60,] -0.0817121670 -0.144870101 0.986070878 [61,] -0.0798552345 -0.145901905 0.986070878 [62,] -0.0779852754 -0.146909908 0.986070878 [63,] -0.0761025947 -0.147893947 0.986070878 [64,] -0.0742074995 -0.148853859 0.986070878 [65,] -0.0723002989 -0.149789489 0.986070878 [66,] -0.0703813041 -0.150700685 0.986070878 [67,] -0.0684508281 -0.151587297 0.986070878 [68,] -0.0665091859 -0.152449180 0.986070878 [69,] -0.0645566941 -0.153286195 0.986070878 [70,] -0.0625936713 -0.154098205 0.986070878 [71,] -0.0606204377 -0.154885076 0.986070878 [72,] -0.0586373152 -0.155646682 0.986070878 [73,] -0.0566446273 -0.156382897 0.986070878 [74,] -0.0546426990 -0.157093602 0.986070878 [75,] -0.0526318570 -0.157778680 0.986070878 [76,] -0.0506124293 -0.158438021 0.986070878 [77,] -0.0485847452 -0.159071515 0.986070878 [78,] -0.0465491355 -0.159679060 0.986070878 [79,] -0.0445059324 -0.160260558 0.986070878 [80,] -0.0389989648 -0.155757135 0.987025225 [81,] -0.0370064680 -0.156242523 0.987025225 [82,] -0.0350079344 -0.156702422 0.987025225 [83,] -0.0330036900 -0.157136759 0.987025225 [84,] -0.0309940617 -0.157545462 0.987025225 [85,] -0.0289793774 -0.157928465 0.987025225 [86,] -0.0269599658 -0.158285706 0.987025225 [87,] -0.0249361563 -0.158617126 0.987025225 [88,] -0.0229082789 -0.158922671 0.987025225 [89,] -0.0208766646 -0.159202291 0.987025225 [90,] -0.0188416447 -0.159455940 0.987025225 [91,] -0.0142325904 -0.154143723 0.987945923 [92,] -0.0122627200 -0.154312928 0.987945923 [93,] -0.0102908491 -0.154456960 0.987945923 [94,] -0.0083172996 -0.154575796 0.987945923 [95,] -0.0063423933 -0.154669416 0.987945923 [96,] -0.0043664523 -0.154737805 0.987945923 [97,] -0.0023897990 -0.154780952 0.987945923 [98,] -0.0004127559 -0.154798849 0.987945923 [99,] 0.0034091884 -0.148989256 0.988832938 [100,] 0.0053117875 -0.148933562 0.988832938 [101,] 0.0072135201 -0.148853573 0.988832938 [102,] 0.0091140759 -0.148749301 0.988832938 [103,] 0.0110131451 -0.148620765 0.988832938 [104,] 0.0129104176 -0.148467984 0.988832938 [105,] 0.0148055841 -0.148290983 0.988832938 [106,] 0.0166983354 -0.148089793 0.988832938 [107,] 0.0196817481 -0.141893528 0.989686241 [108,] 0.0214923940 -0.141630581 0.989686241 [109,] 0.0232995338 -0.141344530 0.989686241 [110,] 0.0251028728 -0.141035422 0.989686241 [111,] 0.0269021169 -0.140703307 0.989686241 [112,] 0.0286969724 -0.140348239 0.989686241 [113,] 0.0304871466 -0.139970277 0.989686241 [114,] 0.0322723476 -0.139569481 0.989686241 [115,] 0.0360780030 -0.132652299 0.990505803 [116,] 0.0377692833 -0.132180694 0.990505803 [117,] 0.0394544025 -0.131687527 0.990505803 [118,] 0.0411330855 -0.131172878 0.990505803 [119,] 0.0428050585 -0.130636831 0.990505803 [120,] 0.0444700488 -0.130079474 0.990505803 [121,] 0.0461277848 -0.129500896 0.990505803 [122,] 0.0477779961 -0.128901194 0.990505803 [123,] 0.0504635975 -0.121632225 0.991291595 [124,] 0.0520129572 -0.120977788 0.991291595 [125,] 0.0535538320 -0.120303616 0.991291595 [126,] 0.0550859708 -0.119609819 0.991291595 [127,] 0.0566091234 -0.118896510 0.991291595 [128,] 0.0581230415 -0.118163806 0.991291595 [129,] 0.0596274781 -0.117411826 0.991291595 [130,] 0.0611221877 -0.116640692 0.991291595 [131,] 0.0626069266 -0.115850532 0.991291595 [132,] 0.0640529177 -0.108382357 0.992043592 [133,] 0.0654319428 -0.107555439 0.992043592 [134,] 0.0668002941 -0.106710976 0.992043592 [135,] 0.0681577485 -0.105849104 0.992043592 [136,] 0.0695040843 -0.104969966 0.992043592 [137,] 0.0708390821 -0.104073705 0.992043592 [138,] 0.0721625240 -0.103160466 0.992043592 [139,] 0.0734741942 -0.102230398 0.992043592 [140,] 0.0747738787 -0.101283654 0.992043592 [141,] 0.0760613654 -0.100320388 0.992043592 [142,] 0.0773364443 -0.099340757 0.992043592 [143,] 0.0785989075 -0.098344920 0.992043592 [144,] 0.0796743989 -0.089866925 0.992761767 [145,] 0.0808156724 -0.088842001 0.992761767 [146,] 0.0819437627 -0.087802584 0.992761767 [147,] 0.0830584856 -0.086748844 0.992761767 [148,] 0.0841596593 -0.085680953 0.992761767 [149,] 0.0852471042 -0.084599085 0.992761767 [150,] 0.0863206429 -0.083503417 0.992761767 [151,] 0.0873801003 -0.082394127 0.992761767 [152,] 0.0884253034 -0.081271396 0.992761767 [153,] 0.0894560820 -0.080135407 0.992761767 [154,] 0.0904722676 -0.078986346 0.992761767 [155,] 0.0914736947 -0.077824400 0.992761767 [156,] 0.0924601999 -0.076649759 0.992761767 [157,] 0.0934316222 -0.075462613 0.992761767 [158,] 0.0943878031 -0.074263158 0.992761767 [159,] 0.0953285867 -0.073051589 0.992761767 [160,] 0.0962538195 -0.071828102 0.992761767 [161,] 0.0971633507 -0.070592899 0.992761767 [162,] 0.1168722125 -0.027657910 0.992761767 [163,] 0.1172159242 -0.026162973 0.992761767 [164,] 0.1175405147 -0.024663768 0.992761767 [165,] 0.1178459310 -0.023160539 0.992761767 [166,] 0.1181321233 -0.021653533 0.992761767 [167,] 0.1183990449 -0.020142994 0.992761767 [168,] 0.1186466523 -0.018629169 0.992761767 [169,] 0.1188749050 -0.017112306 0.992761767 [170,] 0.1190837659 -0.015592651 0.992761767 [171,] 0.1192732008 -0.014070452 0.992761767 [172,] 0.1194431789 -0.012545958 0.992761767 [173,] 0.1195936725 -0.011019417 0.992761767 [174,] 0.1197246569 -0.009491079 0.992761767 [175,] 0.1198361109 -0.007961192 0.992761767 [176,] 0.1199280162 -0.006430007 0.992761767 [177,] 0.1200003578 -0.004897773 0.992761767 [178,] 0.1258613448 0.002904044 0.992043592 [179,] 0.1258139889 0.004511297 0.992043592 [180,] 0.1257461091 0.006117814 0.992043592 [181,] 0.1256577165 0.007723333 0.992043592 [182,] 0.1255488257 0.009327592 0.992043592 [183,] 0.1254194542 0.010930329 0.992043592 [184,] 0.1252696233 0.012531283 0.992043592 [185,] 0.1250993574 0.014130193 0.992043592 [186,] 0.1249086843 0.015726798 0.992043592 [187,] 0.1296430857 0.023100720 0.991291595 [188,] 0.1293374712 0.024754626 0.991291595 [189,] 0.1290107581 0.026404493 0.991291595 [190,] 0.1286629996 0.028050053 0.991291595 [191,] 0.1282942526 0.029691037 0.991291595 [192,] 0.1279045772 0.031327178 0.991291595 [193,] 0.1274940369 0.032958208 0.991291595 [194,] 0.1321734722 0.037794549 0.990505803 [195,] 0.1316799830 0.039479574 0.990505803 [196,] 0.1311650132 0.041158159 0.990505803 [197,] 0.1306286466 0.042830029 0.990505803 [198,] 0.1300709707 0.044494913 0.990505803 [199,] 0.1294920766 0.046152538 0.990505803 [200,] 0.1329962711 0.053227215 0.989686241 [201,] 0.1323056103 0.054921489 0.989686241 [202,] 0.1315933666 0.056606805 0.989686241 [203,] 0.1308596564 0.058282886 0.989686241 [204,] 0.1301045992 0.059949460 0.989686241 [205,] 0.1337135793 0.065803494 0.988832938 [206,] 0.1328622368 0.067505904 0.988832938 [207,] 0.1319892208 0.069197302 0.988832938 [208,] 0.1310946736 0.070877413 0.988832938 [209,] 0.1342464739 0.077076185 0.987945923 [210,] 0.1332511142 0.078784482 0.987945923 [211,] 0.1322340175 0.080479927 0.987945923 [212,] 0.1311953496 0.082162244 0.987945923 [213,] 0.1338608996 0.088670537 0.987025225 [214,] 0.1327174893 0.090372964 0.987025225 [215,] 0.1315524291 0.092060648 0.987025225 [216,] 0.1303659089 0.093733315 0.987025225 [217,] 0.1337917610 0.098812899 0.986070878 [218,] 0.1325188191 0.100513616 0.986070878 [219,] 0.1312242596 0.102197936 0.986070878 [220,] 0.1299082937 0.103865584 0.986070878 [221,] 0.1330195842 0.109167060 0.985082912 [222,] 0.1316144629 0.110857070 0.985082912 [223,] 0.1301878715 0.112528996 0.985082912 [224,] 0.1287400428 0.114182565 0.985082912 [225,] 0.1315230847 0.119686735 0.984061362 [226,] 0.1299837291 0.121356774 0.984061362 [227,] 0.1284231694 0.123007016 0.984061362 [228,] 0.1309378669 0.128662207 0.983006262 [229,] 0.1292839251 0.130324040 0.983006262 [230,] 0.1276088934 0.131964612 0.983006262 [231,] 0.1280777399 0.139405248 0.981917649 [232,] 0.1262868223 0.141029674 0.981917649 [233,] 0.1263557095 0.148574241 0.980795559 [234,] 0.1244478267 0.150175927 0.980795559 [235,] 0.1261149952 0.156206326 0.979640032 [236,] 0.1241096558 0.157804314 0.979640032 [237,] 0.1220840707 0.159376560 0.979640032 [238,] 0.1234565999 0.165504992 0.978451105 [239,] 0.1213327157 0.167068269 0.978451105 [240,] 0.1224848528 0.173266537 0.977228821 [241,] 0.1202619181 0.174816770 0.977228821 [242,] 0.1211909988 0.181077378 0.975973219 [243,] 0.1180193652 0.176338486 0.977228821 [244,] 0.1188684102 0.182610449 0.975973219 [245,] 0.1165264308 0.184113731 0.975973219 [246,] 0.1171493215 0.190437563 0.974684344 [247,] 0.1147075151 0.191918250 0.974684344 [248,] 0.1151021829 0.198286253 0.973362240 [249,] 0.1153485964 0.204688032 0.972006950 [250,] 0.1125603008 0.199740155 0.973362240 [251,] 0.1127249312 0.206144559 0.972006950 [252,] 0.1127401330 0.212577862 0.970618522 [253,] 0.1100159124 0.214000430 0.970618522 [254,] 0.1097985020 0.220457386 0.969197003 [255,] 0.1094300441 0.226935308 0.967742441 [256,] 0.1069738847 0.221841741 0.969197003 [257,] 0.1065227215 0.228314429 0.967742441 [258,] 0.1059197495 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0.985082912 [910,] -0.1392548871 0.101092696 0.985082912 [911,] -0.1370497385 0.094242207 0.986070878 [912,] -0.1382422130 0.092484133 0.986070878 [913,] -0.1394121363 0.090710973 0.986070878 [914,] -0.1405593175 0.088923015 0.986070878 [915,] -0.1416835696 0.087120551 0.986070878 [916,] -0.1398979962 0.078802000 0.987025225 [917,] -0.1408930375 0.077008808 0.987025225 [918,] -0.1418650951 0.075203054 0.987025225 [919,] -0.1428140106 0.073385032 0.987025225 [920,] -0.1437396290 0.071555039 0.987025225 [921,] -0.1411189073 0.063626316 0.987945923 [922,] -0.1419200266 0.061818769 0.987945923 [923,] -0.1426979946 0.060001137 0.987945923 [924,] -0.1434526846 0.058173717 0.987945923 [925,] -0.1441839734 0.056336808 0.987945923 [926,] -0.1448917418 0.054490708 0.987945923 [927,] -0.1455758741 0.052635719 0.987945923 [928,] -0.1430967805 0.041626103 0.988832938 [929,] -0.1436167537 0.039795089 0.988832938 [930,] -0.1441132989 0.037957583 0.988832938 [931,] -0.1445863353 0.036113885 0.988832938 [932,] -0.1450357854 0.034264296 0.988832938 [933,] -0.1454615762 0.032409118 0.988832938 [934,] -0.1458636380 0.030548652 0.988832938 [935,] -0.1462419054 0.028683204 0.988832938 [936,] -0.1465963165 0.026813076 0.988832938 [937,] -0.1469268137 0.024938574 0.988832938 [938,] -0.1472333429 0.023060004 0.988832938 [939,] -0.1475158542 0.021177672 0.988832938 $prob.content [1] 0.2 $level 80% 0.9686737 $bw [1] 0.1406712 > > #Plug-in HDR estimator for data on earthquakes on Earth > if (requireNamespace("ggplot2", quietly = TRUE)) { + library(ggplot2) + } > if (requireNamespace("maps", quietly = TRUE)) { + library(maps) + } > if (requireNamespace("mapproj", quietly = TRUE)) { + library(mapproj) + } > data(earthquakes) > library(Directional) Directional: 7.6 _ _ _ | _ _ \ | | | | _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | | | | |_| | |_ _ | __ | | _ _ _\ _| |_ |_| | _ _ | / _ _ \ / _ _ \ | | | | | | _ | _ _\ | _ _ _| | | |_ _| _ | | | | | | | | | | | | | | | |_ _| | | | | | | \_ _ | |_ _ _ | |_ | | | |_ _| | | | | | | |_ _| \_ | | |_ _ _ / |_| |_| \_ _ _\ |_ _ _ _/ |_ _\ |_| |_ _ _ _| |_| |_| \_ _ _ _ _/ |_| > hdr08<-as.data.frame(euclid.inv(sphere.plugin.hdr(euclid(earthquakes),tau=0.8, + plot.hdr=FALSE)$hdr)) > world <- map_data("world") > g.earthquakes <- ggplot() + + geom_map(data = world, map = world, + mapping = aes(map_id = region), + color = "grey90", fill = "grey80") + + geom_point(data = earthquakes, + mapping = aes(x = Longitude, y = Latitude), + color = "red",alpha=.2,size=.75,stroke=0) + + geom_point(data = hdr08, + mapping = aes(x = Long, y = Lat), + color = "darkblue", size = 1) + + scale_y_continuous(breaks = NULL, limits = c(-90, 90)) + + scale_x_continuous(breaks = NULL, limits = c(-180, 180)) + + coord_map("mercator") > g.earthquakes Error in `geom_point()`: ! Problem while computing aesthetics. ℹ Error occurred in the 3rd layer. Caused by error: ! object 'Long' not found Backtrace: ▆ 1. ├─base (local) ``(x) 2. ├─ggplot2 (local) `print.ggplot2::ggplot`(x) 3. │ ├─ggplot2::ggplot_build(x) 4. │ └─ggplot2 (local) `ggplot_build.ggplot2::ggplot`(x) 5. │ └─ggplot2:::by_layer(...) 6. │ ├─rlang::try_fetch(...) 7. │ │ ├─base::tryCatch(...) 8. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 9. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 10. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 11. │ │ └─base::withCallingHandlers(...) 12. │ └─ggplot2 (local) f(l = layers[[i]], d = data[[i]]) 13. │ └─l$compute_aesthetics(d, plot) 14. │ └─ggplot2 (local) compute_aesthetics(..., self = self) 15. │ └─ggplot2:::eval_aesthetics(aesthetics, data) 16. │ └─base::lapply(aesthetics, eval_tidy, data = data, env = env) 17. │ └─rlang (local) FUN(X[[i]], ...) 18. └─rlang (local) ``(``) 19. └─handlers[[1L]](cnd) 20. └─cli::cli_abort(...) 21. └─rlang::abort(...) Execution halted * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * checking for new files in some other directories ... OK * DONE Status: 1 ERROR See ‘/data/blackswan/ripley/R/packages/tests-devel/HDiR.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 11:34.59, 618.68 + 67.26