* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/GRIN2.Rcheck’ * using R Under development (unstable) (2025-05-11 r88197) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) * running under: Fedora Linux 40 (Workstation Edition) * using session charset: UTF-8 * checking for file ‘GRIN2/DESCRIPTION’ ... OK * this is package ‘GRIN2’ version ‘1.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘GRIN2’ can be installed ... [57s/57s] OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [17s/17s] OK * checking whether the package can be loaded with stated dependencies ... [17s/17s] OK * checking whether the package can be unloaded cleanly ... [17s/17s] OK * checking whether the namespace can be loaded with stated dependencies ... [17s/17s] OK * checking whether the namespace can be unloaded cleanly ... [17s/17s] OK * checking loading without being on the library search path ... [18s/18s] OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [78s/78s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [56s/59s] OK * checking examples with --run-donttest ... [40s/42s] ERROR Running examples in ‘GRIN2-Ex.R’ failed The error most likely occurred in: > ### Name: get.ensembl.annotation > ### Title: Get Ensembl Gene and Regulatory Features Annotation Data > ### Aliases: get.ensembl.annotation > > ### ** Examples > > ## No test: > # Retrieve annotation data for human hg19 genome assembly: > hg19.ann=get.ensembl.annotation("Human_GRCh37") Retrieving gene annotation data from Ensembl BioMart: Mon May 12 22:26:57 2025 Retrieving computationally predicted regulatory features from Ensembl regulatory build: Mon May 12 22:27:01 2025 Error: Your query has been redirected to http://status.ensembl.org indicating this Ensembl service is currently unavailable. Look at ?useEnsembl for details on how to try a mirror site. Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [84s/89s] OK * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * checking for new files in some other directories ... OK * DONE Status: 1 ERROR See ‘/data/blackswan/ripley/R/packages/tests-devel/GRIN2.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 10:50.45, 574.71 + 63.39