* using log directory ‘/data/localhost/ripley/R/packages/tests-donttest/GPSeqClus.Rcheck’ * using R Under development (unstable) (2026-08-22 r90441) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2) GNU Fortran (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2) * running under: Fedora Linux 44 (Server Edition) * using session charset: UTF-8 * current time: 2026-08-22 19:49:30 UTC * checking for file ‘GPSeqClus/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘GPSeqClus’ version ‘1.5.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘GPSeqClus’ can be installed ... [7s/10s] OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [10s/17s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK * checking examples with --run-donttest ... ERROR Running examples in ‘GPSeqClus-Ex.R’ failed The error most likely occurred in: > ### Name: GPSeq_clus > ### Title: Sequential cluster algorithm of location data > ### Aliases: GPSeq_clus > > ### ** Examples > > GPSeq_clus(dat = ML_ex_dat[1:50,], search_radius_m = 200, window_days = 6, + clus_min_locs = 3, show_plots = c(FALSE, "mean")) TOTAL PROGRESS | | | 0% | |======================================================================| 100% [[1]] AID TelemDate Lat Long clus_ID 1 ML1605M 2017-01-01 02:00:53 40.95052 -109.2219 1 2 ML1605M 2017-01-01 05:01:23 40.95109 -109.2237 1 3 ML1605M 2017-01-01 08:01:00 40.95110 -109.2236 1 4 ML1605M 2017-01-01 11:01:00 40.94980 -109.2219 1 5 ML1605M 2017-01-01 14:00:58 40.94507 -109.2220 NA 6 ML1605M 2017-01-01 17:00:51 40.94209 -109.2209 NA 7 ML1605M 2017-01-01 20:01:00 40.93878 -109.2213 2 8 ML1605M 2017-01-01 23:00:53 40.93873 -109.2213 2 9 ML1605M 2017-01-02 02:01:25 40.93880 -109.2213 2 10 ML1605M 2017-01-02 05:00:37 40.92419 -109.2237 NA 11 ML1605M 2017-01-02 08:00:37 40.92419 -109.2237 NA 12 ML1605M 2017-01-02 11:00:40 40.91951 -109.2318 NA 13 ML1605M 2017-01-02 14:00:37 40.91479 -109.2344 NA 14 ML1605M 2017-01-02 17:00:37 40.90190 -109.2396 NA 15 ML1605M 2017-01-02 20:00:37 40.90043 -109.2306 NA 16 ML1605M 2017-01-02 23:00:00 NA NA NA 17 ML1605M 2017-01-03 02:01:29 40.89745 -109.2309 NA 18 ML1605M 2017-01-03 05:00:00 NA NA NA 19 ML1605M 2017-01-03 08:00:00 NA NA NA 20 ML1605M 2017-01-03 11:00:00 NA NA NA 21 ML1605M 2017-01-03 14:00:42 40.89250 -109.2194 NA 22 ML1605M 2017-01-03 17:00:38 40.89031 -109.2169 NA 23 ML1605M 2017-01-03 20:00:38 40.89738 -109.2121 NA 24 ML1605M 2017-01-03 23:00:38 40.91401 -109.2139 3 25 ML1605M 2017-01-04 02:00:38 40.91405 -109.2139 3 26 ML1605M 2017-01-04 05:00:59 40.91403 -109.2139 3 27 ML1605M 2017-01-04 08:00:41 40.91662 -109.2152 NA 28 ML1605M 2017-01-04 11:00:38 40.92244 -109.2014 NA 29 ML1605M 2017-01-04 14:00:38 40.92357 -109.2104 NA 30 ML1605M 2017-01-04 17:00:37 40.93037 -109.2291 NA 31 ML1605M 2017-01-04 20:01:01 40.93209 -109.2262 4 32 ML1605M 2017-01-04 23:00:52 40.93169 -109.2265 4 33 ML1605M 2017-01-05 02:01:00 40.93161 -109.2263 4 34 ML1605M 2017-01-05 05:01:01 40.93195 -109.2300 NA 35 ML1605M 2017-01-05 08:01:22 40.93164 -109.2265 4 36 ML1605M 2017-01-05 11:00:37 40.94304 -109.2138 NA 37 ML1605M 2017-01-05 14:01:29 40.94590 -109.2087 NA 38 ML1605M 2017-01-05 17:00:00 NA NA NA 39 ML1605M 2017-01-05 20:00:00 NA NA NA 40 ML1605M 2017-01-05 23:00:00 NA NA NA 41 ML1605M 2017-01-06 02:00:00 NA NA NA 42 ML1605M 2017-01-06 05:00:00 NA NA NA 43 ML1605M 2017-01-06 08:00:00 NA NA NA 44 ML1605M 2017-01-06 11:00:00 NA NA NA 45 ML1605M 2017-01-06 14:01:00 40.94607 -109.2091 NA 46 ML1605M 2017-01-06 17:00:00 NA NA NA 47 ML1605M 2017-01-06 20:00:00 NA NA NA 48 ML1605M 2017-01-06 23:00:37 40.95478 -109.2158 NA 49 ML1605M 2017-01-07 02:00:50 40.94574 -109.2119 NA 50 ML1605M 2017-01-07 05:01:14 40.94573 -109.2119 NA [[2]] AID clus_ID clus_start clus_end clus_status g_c_Long 1 ML1605M 1 2017-01-01 02:00:53 2017-01-01 11:01:00 Closed -109.2228 2 ML1605M 2 2017-01-01 20:01:00 2017-01-02 02:01:25 Closed -109.2213 4 ML1605M 3 2017-01-03 23:00:38 2017-01-04 05:00:59 Closed -109.2139 6 ML1605M 4 2017-01-04 20:01:01 2017-01-05 08:01:22 Closed -109.2264 g_c_Lat g_med_Long g_med_Lat clus_dur_hr n_clus_locs visits 1 40.95063 -109.2228 40.95081 9 hours 4 1 2 40.93877 -109.2213 40.93878 6 hours 3 1 4 40.91403 -109.2139 40.91403 6 hours 3 1 6 40.93176 -109.2264 40.93167 12 hours 4 2 fix_succ_clus_dur adj_clus_locs fid max_foray clus_radius avg_clus_dist 1 1 4 4 117 117 92 2 1 3 3 5 5 3 4 1 3 3 2 2 1 6 1 4 3 306 40 21 n_24_per bin_24hr season night_pts night_prop 1 1 0 NA 2 0.50 2 1 0 NA 3 1.00 4 1 0 NA 3 1.00 6 1 0 NA 3 0.75 > > ## No test: > GPSeq_clus(dat = ML_ex_dat, search_radius_m = 50, window_days = 2.5, clus_min_locs = 12, + centroid_calc = "median", show_plots = c(TRUE, "median"), scale_plot_clus = FALSE, + season_breaks_jul = c(120, 240, 300), daylight_hrs = c(8, 16), prbar=FALSE) Error in `map()`: ℹ In index: 1. Caused by error in `if (!provider %in% names(loaded_providers$providers)) ...`: ! argument is of length zero Backtrace: ▆ 1. ├─GPSeqClus::GPSeq_clus(...) 2. │ └─esri %>% ... 3. ├─purrr::walk(...) 4. │ └─purrr::map(.x, .f, ..., .progress = .progress) 5. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress) 6. │ ├─purrr:::with_indexed_errors(...) 7. │ │ └─base::withCallingHandlers(...) 8. │ ├─purrr:::call_with_cleanup(...) 9. │ └─GPSeqClus (local) .f(.x[[i]], ...) 10. │ └─a %>% leaflet::addProviderTiles(x, group = x) 11. ├─leaflet::addProviderTiles(., x, group = x) 12. └─base::.handleSimpleError(...) 13. └─purrr (local) h(simpleError(msg, call)) 14. └─cli::cli_abort(...) 15. └─rlang::abort(...) Execution halted * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * checking for new files in some other directories ... OK * DONE Status: 1 ERROR See ‘/data/localhost/ripley/R/packages/tests-donttest/GPSeqClus.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 1:48.43, 59.21 + 13.59