* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/FishPhyloMaker.Rcheck’
* using R Under development (unstable) (2026-06-19 r90178)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* current time: 2026-06-19 10:33:22 UTC
* checking for file ‘FishPhyloMaker/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘FishPhyloMaker’ version ‘0.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘FishPhyloMaker’ can be installed ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
  ‘knitr’ ‘rmarkdown’ ‘utils’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking examples with --run-donttest ... ERROR
Running examples in ‘FishPhyloMaker-Ex.R’ failed
The error most likely occurred in:

> ### Name: FishPhyloMaker
> ### Title: Obtaining fish phylogeny according to a local pool of species
> ### Aliases: FishPhyloMaker
> 
> ### ** Examples
> 
> ## No test: 
>     data("taxon_data_PhyloMaker")
>     res_phylo <- FishPhyloMaker(data = taxon_data_PhyloMaker,
+     insert.base.node = TRUE, 
+     return.insertions = TRUE, 
+     progress.bar = TRUE)
Error in (function (cond)  : 
  error in evaluating the argument 'conn' in selecting a method for function 'dbExecute': Invalid Error: HTTP Error: Failed to download extension "h3" at URL "http://community-extensions.duckdb.org/v1.5.4/linux_amd64/h3.duckdb_extension.gz" (HTTP 404)

Candidate extensions: "s3", "http", "https", "httpfs", "motherduck"
For more info, visit https://duckdb.org/docs/stable/extensions/troubleshooting?version=v1.5.4&platform=linux_amd64&extension=h3
ℹ Context: rapi_execute
ℹ Error type: INVALID
Calls: FishPhyloMaker ... <Anonymous> -> signal_abort -> signalCondition -> <Anonymous>
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [28s/28s] OK
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/FishPhyloMaker.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 1:06.96, 55.22 + 12.04