* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/FIESTA.Rcheck’
* using R Under development (unstable) (2025-12-20 r89211)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* checking for file ‘FIESTA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘FIESTA’ version ‘3.7.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘FIESTA’ can be installed ... [41s/42s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [90s/91s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking examples with --run-donttest ... ERROR
Running examples in ‘FIESTA-Ex.R’ failed
The error most likely occurred in:

> ### Name: modGBarea
> ### Title: Green-Book module - Generate area estimates.
> ### Aliases: modGBarea
> ### Keywords: data
> 
> ### ** Examples
> 
> ## No test: 
> GBpopdat <- modGBpop(
+ popTabs = list(cond = FIESTA::WYcond,  
+                tree = FIESTA::WYtree,        
+                seed = FIESTA::WYseed),      
+ popTabIDs = list(cond = "PLT_CN"),            
+ pltassgn = FIESTA::WYpltassgn,  
+ pltassgnid = "CN",        
+ pjoinid = "PLT_CN",         
+ unitarea = FIESTA::WYunitarea,
+ unitvar = "ESTN_UNIT",        
+ strata = TRUE,           
+ stratalut = WYstratalut,    
+ strata_opts = strata_options(getwt = TRUE)   
+ )
savedata=FALSE with savedata parameters... no data are saved
variables are missing from dataset: STATECD, UNITCD, COUNTYCD, PLOT, PLOT_STATUS_CD, PLOT_NONSAMPLE_REASN_CD, INTENSITY, SUBCYCLE, MACRO_BREAKPOINT_DIA
SURVEY table does not exist in database... assuming annual inventory plots
INVYR not in input data...  no invyrs returned...
SUBCYCLE not in data... assuming all SUBCYCLE <> 99
removing nonsampled forest plots...
Error in `[.data.table`(auxlut, , `:=`(strwt, prop.table(get(getwtvar))),  : 
  attempt access index 5/5 in VECTOR_ELT
Calls: modGBpop -> check.auxiliary
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [63s/64s] ERROR
Error(s) in re-building vignettes:
  ...
--- re-building ‘FIESTA_tutorial_GB.Rmd’ using rmarkdown

Quitting from FIESTA_tutorial_GB.Rmd:247-261 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 5/5 in VECTOR_ELT
---
Backtrace:
    ▆
 1. └─FIESTA::modGBpop(...)
 2.   └─FIESTA:::check.auxiliary(...)
 3.     ├─base::suppressWarnings(...)
 4.     │ └─base::withCallingHandlers(...)
 5.     ├─auxlut[, `:=`(strwt, prop.table(get(getwtvar))), by = unitvar]
 6.     └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'FIESTA_tutorial_GB.Rmd' failed with diagnostics:
attempt access index 5/5 in VECTOR_ELT
--- failed re-building ‘FIESTA_tutorial_GB.Rmd’

--- re-building ‘FIESTA_tutorial_MA.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘FIESTA_tutorial_MA.Rmd’

--- re-building ‘FIESTA_tutorial_PB.Rmd’ using rmarkdown

Quitting from FIESTA_tutorial_PB.Rmd:538-549 [unnamed-chunk-31]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 5/5 in VECTOR_ELT
---
Backtrace:
    ▆
 1. └─FIESTA::modPBpop(...)
 2.   └─FIESTA:::check.auxiliary(...)
 3.     ├─base::suppressWarnings(...)
 4.     │ └─base::withCallingHandlers(...)
 5.     ├─auxlut[, `:=`(strwt, prop.table(get(getwtvar))), by = unitvar]
 6.     └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'FIESTA_tutorial_PB.Rmd' failed with diagnostics:
attempt access index 5/5 in VECTOR_ELT
--- failed re-building ‘FIESTA_tutorial_PB.Rmd’

--- re-building ‘FIESTA_tutorial_SA.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘FIESTA_tutorial_SA.Rmd’

SUMMARY: processing the following files failed:
  ‘FIESTA_tutorial_GB.Rmd’ ‘FIESTA_tutorial_PB.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [11s/11s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 2 ERRORs
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/FIESTA.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 5:09.84, 275.25 + 26.43