* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/DMCfun.Rcheck’ * using R Under development (unstable) (2023-09-19 r85177) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 13.2.1 20230728 (Red Hat 13.2.1-1) GNU Fortran (GCC) 13.2.1 20230728 (Red Hat 13.2.1-1) * running under: Fedora Linux 38 (Workstation Edition) * using session charset: UTF-8 * checking for file ‘DMCfun/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘DMCfun’ version ‘2.0.2’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘DMCfun’ can be installed ... [55s/51s] OK * used C++ compiler: ‘g++ (GCC) 13.2.1 20230728 (Red Hat 13.2.1-1)’ * checking C++ specification ... NOTE Specified C++11: please drop specification unless essential * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [16s/16s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking examples ... [15s/12s] OK * checking examples with --run-donttest ... [15m/28m] ERROR Running examples in ‘DMCfun-Ex.R’ failed The error most likely occurred in: > ### Name: dmcFitDE > ### Title: dmcFitDE > ### Aliases: dmcFitDE > > ### ** Examples > > ## No test: > # The code below can exceed CRAN check time limit, hence donttest > # NB. The following code when using numCores = 2 (default) takes approx 20 minutes on > # a standard desktop, whilst when increasing the number of cores used, (numCores = 12), > # the code takes approx 5 minutes. > > # Example 1: Flanker data from Ulrich et al. (2015) > fit <- dmcFitDE(flankerData); Iteration: 1 bestvalit: 29.673767 bestmemit: 35.836284 169.362064 0.939619 28.294321 378.522492 74.827088 2.293132 3.804475 Iteration: 2 bestvalit: 24.128784 bestmemit: 33.095243 48.722410 0.836771 54.737571 340.074720 73.076000 2.429436 2.779979 Iteration: 3 bestvalit: 24.128784 bestmemit: 33.095243 48.722410 0.836771 54.737571 340.074720 73.076000 2.429436 2.779979 Iteration: 4 bestvalit: 24.128784 bestmemit: 33.095243 48.722410 0.836771 54.737571 340.074720 73.076000 2.429436 2.779979 Iteration: 5 bestvalit: 24.128784 bestmemit: 33.095243 48.722410 0.836771 54.737571 340.074720 73.076000 2.429436 2.779979 Iteration: 6 bestvalit: 24.128784 bestmemit: 33.095243 48.722410 0.836771 54.737571 340.074720 73.076000 2.429436 2.779979 Iteration: 7 bestvalit: 24.128784 bestmemit: 33.095243 48.722410 0.836771 54.737571 340.074720 73.076000 2.429436 2.779979 Iteration: 8 bestvalit: 24.128784 bestmemit: 33.095243 48.722410 0.836771 54.737571 340.074720 73.076000 2.429436 2.779979 Iteration: 9 bestvalit: 24.128784 bestmemit: 33.095243 48.722410 0.836771 54.737571 340.074720 73.076000 2.429436 2.779979 Iteration: 10 bestvalit: 24.128784 bestmemit: 33.095243 48.722410 0.836771 54.737571 340.074720 73.076000 2.429436 2.779979 Iteration: 11 bestvalit: 17.645768 bestmemit: 26.837918 183.564517 0.713748 63.891023 319.724078 25.570889 1.232599 2.104935 Iteration: 12 bestvalit: 17.645768 bestmemit: 26.837918 183.564517 0.713748 63.891023 319.724078 25.570889 1.232599 2.104935 Iteration: 13 bestvalit: 17.320908 bestmemit: 26.837918 183.564517 0.713748 63.891023 319.724078 25.570889 1.232599 2.433099 Iteration: 14 bestvalit: 17.320908 bestmemit: 26.837918 183.564517 0.713748 63.891023 319.724078 25.570889 1.232599 2.433099 Iteration: 15 bestvalit: 17.320908 bestmemit: 26.837918 183.564517 0.713748 63.891023 319.724078 25.570889 1.232599 2.433099 Iteration: 16 bestvalit: 15.887683 bestmemit: 19.593390 179.219082 0.713298 65.279267 322.670980 17.620935 1.556351 2.699960 Iteration: 17 bestvalit: 15.887683 bestmemit: 19.593390 179.219082 0.713298 65.279267 322.670980 17.620935 1.556351 2.699960 Iteration: 18 bestvalit: 15.887683 bestmemit: 19.593390 179.219082 0.713298 65.279267 322.670980 17.620935 1.556351 2.699960 Iteration: 19 bestvalit: 15.887683 bestmemit: 19.593390 179.219082 0.713298 65.279267 322.670980 17.620935 1.556351 2.699960 Iteration: 20 bestvalit: 15.887683 bestmemit: 19.593390 179.219082 0.713298 65.279267 322.670980 17.620935 1.556351 2.699960 Iteration: 21 bestvalit: 15.887683 bestmemit: 19.593390 179.219082 0.713298 65.279267 322.670980 17.620935 1.556351 2.699960 Iteration: 22 bestvalit: 15.887683 bestmemit: 19.593390 179.219082 0.713298 65.279267 322.670980 17.620935 1.556351 2.699960 Iteration: 23 bestvalit: 15.887683 bestmemit: 19.593390 179.219082 0.713298 65.279267 322.670980 17.620935 1.556351 2.699960 Iteration: 24 bestvalit: 15.887683 bestmemit: 19.593390 179.219082 0.713298 65.279267 322.670980 17.620935 1.556351 2.699960 Iteration: 25 bestvalit: 15.351761 bestmemit: 11.768031 70.121519 0.701677 52.552813 350.307302 28.610699 1.945990 2.115864 Iteration: 26 bestvalit: 15.351761 bestmemit: 11.768031 70.121519 0.701677 52.552813 350.307302 28.610699 1.945990 2.115864 Iteration: 27 bestvalit: 14.905868 bestmemit: 24.578353 66.072191 0.880464 55.008191 354.766587 50.048219 1.907695 2.181023 Iteration: 28 bestvalit: 14.905868 bestmemit: 24.578353 66.072191 0.880464 55.008191 354.766587 50.048219 1.907695 2.181023 Iteration: 29 bestvalit: 14.078106 bestmemit: 20.999957 265.801343 0.736795 60.438280 337.995614 24.934101 1.393788 2.307553 Iteration: 30 bestvalit: 14.078106 bestmemit: 20.999957 265.801343 0.736795 60.438280 337.995614 24.934101 1.393788 2.307553 Iteration: 31 bestvalit: 12.246737 bestmemit: 20.999957 265.801343 0.736795 60.438280 337.995614 38.385914 1.393788 2.307553 Iteration: 32 bestvalit: 12.246737 bestmemit: 20.999957 265.801343 0.736795 60.438280 337.995614 38.385914 1.393788 2.307553 Iteration: 33 bestvalit: 12.246737 bestmemit: 20.999957 265.801343 0.736795 60.438280 337.995614 38.385914 1.393788 2.307553 Iteration: 34 bestvalit: 12.246737 bestmemit: 20.999957 265.801343 0.736795 60.438280 337.995614 38.385914 1.393788 2.307553 Iteration: 35 bestvalit: 12.246737 bestmemit: 20.999957 265.801343 0.736795 60.438280 337.995614 38.385914 1.393788 2.307553 Iteration: 36 bestvalit: 12.246737 bestmemit: 20.999957 265.801343 0.736795 60.438280 337.995614 38.385914 1.393788 2.307553 Iteration: 37 bestvalit: 12.246737 bestmemit: 20.999957 265.801343 0.736795 60.438280 337.995614 38.385914 1.393788 2.307553 Iteration: 38 bestvalit: 12.246737 bestmemit: 20.999957 265.801343 0.736795 60.438280 337.995614 38.385914 1.393788 2.307553 Iteration: 39 bestvalit: 12.246737 bestmemit: 20.999957 265.801343 0.736795 60.438280 337.995614 38.385914 1.393788 2.307553 Iteration: 40 bestvalit: 12.246737 bestmemit: 20.999957 265.801343 0.736795 60.438280 337.995614 38.385914 1.393788 2.307553 Iteration: 41 bestvalit: 12.246737 bestmemit: 20.999957 265.801343 0.736795 60.438280 337.995614 38.385914 1.393788 2.307553 Iteration: 42 bestvalit: 12.246737 bestmemit: 20.999957 265.801343 0.736795 60.438280 337.995614 38.385914 1.393788 2.307553 Iteration: 43 bestvalit: 12.246737 bestmemit: 20.999957 265.801343 0.736795 60.438280 337.995614 38.385914 1.393788 2.307553 Iteration: 44 bestvalit: 12.246737 bestmemit: 20.999957 265.801343 0.736795 60.438280 337.995614 38.385914 1.393788 2.307553 Iteration: 45 bestvalit: 12.246737 bestmemit: 20.999957 265.801343 0.736795 60.438280 337.995614 38.385914 1.393788 2.307553 Iteration: 46 bestvalit: 12.246737 bestmemit: 20.999957 265.801343 0.736795 60.438280 337.995614 38.385914 1.393788 2.307553 Iteration: 47 bestvalit: 12.246737 bestmemit: 20.999957 265.801343 0.736795 60.438280 337.995614 38.385914 1.393788 2.307553 Iteration: 48 bestvalit: 12.246737 bestmemit: 20.999957 265.801343 0.736795 60.438280 337.995614 38.385914 1.393788 2.307553 Iteration: 49 bestvalit: 12.246737 bestmemit: 20.999957 265.801343 0.736795 60.438280 337.995614 38.385914 1.393788 2.307553 Iteration: 50 bestvalit: 12.246737 bestmemit: 20.999957 265.801343 0.736795 60.438280 337.995614 38.385914 1.393788 2.307553 Iteration: 51 bestvalit: 12.246737 bestmemit: 20.999957 265.801343 0.736795 60.438280 337.995614 38.385914 1.393788 2.307553 Iteration: 52 bestvalit: 12.246737 bestmemit: 20.999957 265.801343 0.736795 60.438280 337.995614 38.385914 1.393788 2.307553 Iteration: 53 bestvalit: 12.246737 bestmemit: 20.999957 265.801343 0.736795 60.438280 337.995614 38.385914 1.393788 2.307553 Iteration: 54 bestvalit: 11.935246 bestmemit: 15.153328 119.949786 0.675986 51.394119 339.850246 31.355782 1.565393 2.830932 Iteration: 55 bestvalit: 11.935246 bestmemit: 15.153328 119.949786 0.675986 51.394119 339.850246 31.355782 1.565393 2.830932 Error in unserialize(node$con) : error reading from connection Calls: dmcFitDE ... FUN -> recvData -> recvData.SOCKnode -> unserialize Execution halted * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [63s/137s] [64s/137s] OK * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * checking for new files in some other directories ... OK * DONE Status: 1 ERROR, 1 NOTE See ‘/data/blackswan/ripley/R/packages/tests-devel/DMCfun.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 32:26.20, 1083.58 + 16.68