* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/DMCfun.Rcheck’ * using R Under development (unstable) (2023-01-26 r83691) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by gcc (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2) GNU Fortran (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2) * running under: Fedora 34 (Workstation Edition) * using session charset: UTF-8 * checking for file ‘DMCfun/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘DMCfun’ version ‘2.0.2’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘DMCfun’ can be installed ... [28s/28s] OK * used C++ compiler: ‘g++ (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2)’ * checking C++ specification ... NOTE Specified C++11: please update to current default of C++17 * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking examples ... OK * checking examples with --run-donttest ... [11m/24m] ERROR Running examples in ‘DMCfun-Ex.R’ failed The error most likely occurred in: > ### Name: dmcFitDE > ### Title: dmcFitDE > ### Aliases: dmcFitDE > > ### ** Examples > > ## No test: > # The code below can exceed CRAN check time limit, hence donttest > # NB. The following code when using numCores = 2 (default) takes approx 20 minutes on > # a standard desktop, whilst when increasing the number of cores used, (numCores = 12), > # the code takes approx 5 minutes. > > # Example 1: Flanker data from Ulrich et al. (2015) > fit <- dmcFitDE(flankerData); Iteration: 1 bestvalit: 29.803902 bestmemit: 35.836284 169.362064 0.939619 28.294321 378.522492 74.827088 2.293132 3.804475 Iteration: 2 bestvalit: 24.069159 bestmemit: 33.095243 48.722410 0.836771 54.737571 340.074720 73.076000 2.429436 2.779979 Iteration: 3 bestvalit: 24.069159 bestmemit: 33.095243 48.722410 0.836771 54.737571 340.074720 73.076000 2.429436 2.779979 Iteration: 4 bestvalit: 24.069159 bestmemit: 33.095243 48.722410 0.836771 54.737571 340.074720 73.076000 2.429436 2.779979 Iteration: 5 bestvalit: 23.938798 bestmemit: 31.552680 48.722410 0.836771 54.737571 340.074720 73.076000 2.429436 2.779979 Iteration: 6 bestvalit: 23.938798 bestmemit: 31.552680 48.722410 0.836771 54.737571 340.074720 73.076000 2.429436 2.779979 Iteration: 7 bestvalit: 22.675243 bestmemit: 35.076686 179.219082 0.713298 65.279267 322.670980 9.404021 2.118621 2.882066 Iteration: 8 bestvalit: 22.675243 bestmemit: 35.076686 179.219082 0.713298 65.279267 322.670980 9.404021 2.118621 2.882066 Iteration: 9 bestvalit: 22.675243 bestmemit: 35.076686 179.219082 0.713298 65.279267 322.670980 9.404021 2.118621 2.882066 Iteration: 10 bestvalit: 22.675243 bestmemit: 35.076686 179.219082 0.713298 65.279267 322.670980 9.404021 2.118621 2.882066 Iteration: 11 bestvalit: 17.530413 bestmemit: 26.837918 183.564517 0.713748 63.891023 319.724078 25.570889 1.232599 2.104935 Iteration: 12 bestvalit: 17.530413 bestmemit: 26.837918 183.564517 0.713748 63.891023 319.724078 25.570889 1.232599 2.104935 Iteration: 13 bestvalit: 17.530413 bestmemit: 26.837918 183.564517 0.713748 63.891023 319.724078 25.570889 1.232599 2.104935 Iteration: 14 bestvalit: 17.530413 bestmemit: 26.837918 183.564517 0.713748 63.891023 319.724078 25.570889 1.232599 2.104935 Iteration: 15 bestvalit: 17.530413 bestmemit: 26.837918 183.564517 0.713748 63.891023 319.724078 25.570889 1.232599 2.104935 Iteration: 16 bestvalit: 17.530413 bestmemit: 26.837918 183.564517 0.713748 63.891023 319.724078 25.570889 1.232599 2.104935 Iteration: 17 bestvalit: 13.717279 bestmemit: 22.836923 113.274656 0.775654 65.120119 332.836876 40.136018 1.396534 2.201156 Iteration: 18 bestvalit: 13.717279 bestmemit: 22.836923 113.274656 0.775654 65.120119 332.836876 40.136018 1.396534 2.201156 Iteration: 19 bestvalit: 13.717279 bestmemit: 22.836923 113.274656 0.775654 65.120119 332.836876 40.136018 1.396534 2.201156 Iteration: 20 bestvalit: 13.717279 bestmemit: 22.836923 113.274656 0.775654 65.120119 332.836876 40.136018 1.396534 2.201156 Iteration: 21 bestvalit: 13.717279 bestmemit: 22.836923 113.274656 0.775654 65.120119 332.836876 40.136018 1.396534 2.201156 Iteration: 22 bestvalit: 13.717279 bestmemit: 22.836923 113.274656 0.775654 65.120119 332.836876 40.136018 1.396534 2.201156 Iteration: 23 bestvalit: 13.717279 bestmemit: 22.836923 113.274656 0.775654 65.120119 332.836876 40.136018 1.396534 2.201156 Iteration: 24 bestvalit: 13.717279 bestmemit: 22.836923 113.274656 0.775654 65.120119 332.836876 40.136018 1.396534 2.201156 Iteration: 25 bestvalit: 13.717279 bestmemit: 22.836923 113.274656 0.775654 65.120119 332.836876 40.136018 1.396534 2.201156 Iteration: 26 bestvalit: 13.717279 bestmemit: 22.836923 113.274656 0.775654 65.120119 332.836876 40.136018 1.396534 2.201156 Iteration: 27 bestvalit: 13.717279 bestmemit: 22.836923 113.274656 0.775654 65.120119 332.836876 40.136018 1.396534 2.201156 Iteration: 28 bestvalit: 13.717279 bestmemit: 22.836923 113.274656 0.775654 65.120119 332.836876 40.136018 1.396534 2.201156 Iteration: 29 bestvalit: 13.717279 bestmemit: 22.836923 113.274656 0.775654 65.120119 332.836876 40.136018 1.396534 2.201156 Iteration: 30 bestvalit: 13.564744 bestmemit: 23.278136 113.274656 0.775654 65.120119 332.836876 40.136018 1.396534 2.122020 Iteration: 31 bestvalit: 13.564744 bestmemit: 23.278136 113.274656 0.775654 65.120119 332.836876 40.136018 1.396534 2.122020 Iteration: 32 bestvalit: 12.798676 bestmemit: 23.278136 113.274656 0.775654 65.120119 332.836876 40.136018 1.541403 2.122020 Iteration: 33 bestvalit: 12.798676 bestmemit: 23.278136 113.274656 0.775654 65.120119 332.836876 40.136018 1.541403 2.122020 Iteration: 34 bestvalit: 12.798676 bestmemit: 23.278136 113.274656 0.775654 65.120119 332.836876 40.136018 1.541403 2.122020 Iteration: 35 bestvalit: 12.686260 bestmemit: 23.278136 160.254091 0.775654 65.120119 332.836876 40.136018 1.541403 2.122020 Iteration: 36 bestvalit: 12.686260 bestmemit: 23.278136 160.254091 0.775654 65.120119 332.836876 40.136018 1.541403 2.122020 Iteration: 37 bestvalit: 10.973901 bestmemit: 13.705323 115.482258 0.624599 61.667049 315.579256 16.589686 2.024671 2.439801 Iteration: 38 bestvalit: 10.973901 bestmemit: 13.705323 115.482258 0.624599 61.667049 315.579256 16.589686 2.024671 2.439801 Iteration: 39 bestvalit: 10.973901 bestmemit: 13.705323 115.482258 0.624599 61.667049 315.579256 16.589686 2.024671 2.439801 Iteration: 40 bestvalit: 10.973901 bestmemit: 13.705323 115.482258 0.624599 61.667049 315.579256 16.589686 2.024671 2.439801 Iteration: 41 bestvalit: 10.973901 bestmemit: 13.705323 115.482258 0.624599 61.667049 315.579256 16.589686 2.024671 2.439801 Iteration: 42 bestvalit: 10.973901 bestmemit: 13.705323 115.482258 0.624599 61.667049 315.579256 16.589686 2.024671 2.439801 Iteration: 43 bestvalit: 10.973901 bestmemit: 13.705323 115.482258 0.624599 61.667049 315.579256 16.589686 2.024671 2.439801 Iteration: 44 bestvalit: 10.973901 bestmemit: 13.705323 115.482258 0.624599 61.667049 315.579256 16.589686 2.024671 2.439801 Iteration: 45 bestvalit: 10.528716 bestmemit: 20.338093 115.482258 0.624599 61.667049 315.579256 16.589686 2.024671 2.439801 Iteration: 46 bestvalit: 10.528716 bestmemit: 20.338093 115.482258 0.624599 61.667049 315.579256 16.589686 2.024671 2.439801 Iteration: 47 bestvalit: 10.528716 bestmemit: 20.338093 115.482258 0.624599 61.667049 315.579256 16.589686 2.024671 2.439801 Iteration: 48 bestvalit: 9.586890 bestmemit: 20.338093 115.482258 0.624599 61.667049 321.241324 16.589686 2.024671 2.439801 Iteration: 49 bestvalit: 9.586890 bestmemit: 20.338093 115.482258 0.624599 61.667049 321.241324 16.589686 2.024671 2.439801 Iteration: 50 bestvalit: 8.622188 bestmemit: 18.207286 115.482258 0.624599 61.667049 321.241324 16.589686 2.024671 2.439801 Iteration: 51 bestvalit: 8.622188 bestmemit: 18.207286 115.482258 0.624599 61.667049 321.241324 16.589686 2.024671 2.439801 Iteration: 52 bestvalit: 8.420123 bestmemit: 18.207286 115.482258 0.624599 61.698457 321.241324 16.589686 2.024671 2.439801 Iteration: 53 bestvalit: 8.420123 bestmemit: 18.207286 115.482258 0.624599 61.698457 321.241324 16.589686 2.024671 2.439801 Iteration: 54 bestvalit: 8.420123 bestmemit: 18.207286 115.482258 0.624599 61.698457 321.241324 16.589686 2.024671 2.439801 Iteration: 55 bestvalit: 8.420123 bestmemit: 18.207286 115.482258 0.624599 61.698457 321.241324 16.589686 2.024671 2.439801 Iteration: 56 bestvalit: 8.420123 bestmemit: 18.207286 115.482258 0.624599 61.698457 321.241324 16.589686 2.024671 2.439801 Iteration: 57 bestvalit: 8.420123 bestmemit: 18.207286 115.482258 0.624599 61.698457 321.241324 16.589686 2.024671 2.439801 Iteration: 58 bestvalit: 8.420123 bestmemit: 18.207286 115.482258 0.624599 61.698457 321.241324 16.589686 2.024671 2.439801 Iteration: 59 bestvalit: 8.420123 bestmemit: 18.207286 115.482258 0.624599 61.698457 321.241324 16.589686 2.024671 2.439801 Iteration: 60 bestvalit: 8.420123 bestmemit: 18.207286 115.482258 0.624599 61.698457 321.241324 16.589686 2.024671 2.439801 Iteration: 61 bestvalit: 8.420123 bestmemit: 18.207286 115.482258 0.624599 61.698457 321.241324 16.589686 2.024671 2.439801 Iteration: 62 bestvalit: 8.420123 bestmemit: 18.207286 115.482258 0.624599 61.698457 321.241324 16.589686 2.024671 2.439801 Iteration: 63 bestvalit: 8.420123 bestmemit: 18.207286 115.482258 0.624599 61.698457 321.241324 16.589686 2.024671 2.439801 Iteration: 64 bestvalit: 8.420123 bestmemit: 18.207286 115.482258 0.624599 61.698457 321.241324 16.589686 2.024671 2.439801 Iteration: 65 bestvalit: 8.420123 bestmemit: 18.207286 115.482258 0.624599 61.698457 321.241324 16.589686 2.024671 2.439801 Iteration: 66 bestvalit: 8.420123 bestmemit: 18.207286 115.482258 0.624599 61.698457 321.241324 16.589686 2.024671 2.439801 Iteration: 67 bestvalit: 8.420123 bestmemit: 18.207286 115.482258 0.624599 61.698457 321.241324 16.589686 2.024671 2.439801 Iteration: 68 bestvalit: 8.420123 bestmemit: 18.207286 115.482258 0.624599 61.698457 321.241324 16.589686 2.024671 2.439801 Iteration: 69 bestvalit: 8.420123 bestmemit: 18.207286 115.482258 0.624599 61.698457 321.241324 16.589686 2.024671 2.439801 Iteration: 70 bestvalit: 8.420123 bestmemit: 18.207286 115.482258 0.624599 61.698457 321.241324 16.589686 2.024671 2.439801 Iteration: 71 bestvalit: 8.420123 bestmemit: 18.207286 115.482258 0.624599 61.698457 321.241324 16.589686 2.024671 2.439801 Iteration: 72 bestvalit: 8.420123 bestmemit: 18.207286 115.482258 0.624599 61.698457 321.241324 16.589686 2.024671 2.439801 Iteration: 73 bestvalit: 8.420123 bestmemit: 18.207286 115.482258 0.624599 61.698457 321.241324 16.589686 2.024671 2.439801 Iteration: 74 bestvalit: 8.420123 bestmemit: 18.207286 115.482258 0.624599 61.698457 321.241324 16.589686 2.024671 2.439801 Iteration: 75 bestvalit: 6.779200 bestmemit: 15.336538 169.125524 0.541555 51.935243 324.675872 27.108972 1.767150 3.850969 Iteration: 76 bestvalit: 6.779200 bestmemit: 15.336538 169.125524 0.541555 51.935243 324.675872 27.108972 1.767150 3.850969 Iteration: 77 bestvalit: 6.779200 bestmemit: 15.336538 169.125524 0.541555 51.935243 324.675872 27.108972 1.767150 3.850969 Error in unserialize(node$con) : error reading from connection Calls: dmcFitDE ... FUN -> recvData -> recvData.SOCKnode -> unserialize Execution halted * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [43s/90s] [43s/90s] OK * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * checking for new files in some other directories ... OK * DONE Status: 1 ERROR, 1 NOTE See ‘/data/blackswan/ripley/R/packages/tests-devel/DMCfun.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 26:15.41, 748.36 + 9.97