* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/CytobankAPIstats.Rcheck’ * using R Under development (unstable) (2021-10-15 r81062) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * checking for file ‘CytobankAPIstats/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘CytobankAPIstats’ version ‘2.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘CytobankAPIstats’ can be installed ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... OK * checking examples with --run-donttest ... ERROR Running examples in ‘CytobankAPIstats-Ex.R’ failed The error most likely occurred in: > ### Name: analyzedata > ### Title: Returns a matrix of event counts or raw medians, as specified by > ### inputs. Columns correspond to fcs files and rows to markers in cell > ### types > ### Aliases: analyzedata > > ### ** Examples > > ## No test: > library(CytobankAPI) Loading required package: curl Using libcurl 7.69.1 with OpenSSL/1.1.1k-fips Loading required package: httr Attaching package: ‘httr’ The following object is masked from ‘package:curl’: handle_reset CytobankAPI 1.4.0 Type CytobankAPI_news() to see new features/changes/bug fixes. Attaching package: ‘CytobankAPI’ The following object is masked from ‘package:httr’: authenticate > cyto_session <- authenticate(site="premium", username="myusername", password="mypassword") Error: Cytobank API 'authentication' request failed [422] The username=myusername is not registered on this site.Please verify this is the correct Cytobank and try again. Execution halted * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * checking for new files in some other directories ... OK * DONE Status: 1 ERROR See ‘/data/blackswan/ripley/R/packages/tests-devel/CytobankAPIstats.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 0:55.37, 66.37 + 6.67