* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/CvmortalityMult.Rcheck’ * using R Under development (unstable) (2025-12-20 r89211) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) * running under: Fedora Linux 40 (Workstation Edition) * using session charset: UTF-8 * checking for file ‘CvmortalityMult/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘CvmortalityMult’ version ‘1.1.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘CvmortalityMult’ can be installed ... [66s/68s] OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [18s/19s] OK * checking whether the package can be loaded with stated dependencies ... [18s/18s] OK * checking whether the package can be unloaded cleanly ... [15s/16s] OK * checking whether the namespace can be loaded with stated dependencies ... [20s/21s] OK * checking whether the namespace can be unloaded cleanly ... [18s/18s] OK * checking loading without being on the library search path ... [17s/18s] OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [98s/101s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [18s/19s] ERROR Running examples in ‘CvmortalityMult-Ex.R’ failed The error most likely occurred in: > ### Name: SpainMap > ### Title: Spain National map information > ### Aliases: SpainMap > > ### ** Examples > > name <- c("Ii") > main <- c("Multiplicative for males") > regionvalue <- c(0.131867619, -0.063994652, 0.088094096, + 0.019685552, 0.064671498, 0.012212161, + -0.088864474, -0.146079884, -0.017703536, + 0.050376721, 0.052476852, -0.022871202, + -0.093952332, 0.049266816, -0.101224890, + 0.001481333, -0.078523511) > > library(sf) Linking to GEOS 3.12.2, GDAL 3.8.5, PROJ 9.3.1; sf_use_s2() is TRUE > > SpainMap(regionvalue, main, name) ── tmap v3 code detected ─────────────────────────────────────────────────────── [v3->v4] `tm_tm_polygons()`: migrate the argument(s) related to the scale of the visual variable `fill` namely 'breaks', 'palette' (rename to 'values') to fill.scale = tm_scale(). [v3->v4] `tm_polygons()`: use 'fill' for the fill color of polygons/symbols (instead of 'col'), and 'col' for the outlines (instead of 'border.col'). This message is displayed once every 8 hours. [v3->v4] `tm_polygons()`: migrate the argument(s) related to the legend of the visual variable `fill` namely 'title' to 'fill.legend = tm_legend()' [v3->v4] `tm_layout()`: use `tm_title()` instead of `tm_layout(title = )` Error in `[.data.table`(d, , `:=`(bbox, do.call(get_bbox, as.list(.SD))), : attempt access index 4/4 in VECTOR_ELT Calls: -> print.tmap -> step4_plot -> [ -> [.data.table Execution halted * checking examples with --run-donttest ... [24s/24s] ERROR Running examples in ‘CvmortalityMult-Ex.R’ failed The error most likely occurred in: > ### Name: SpainMap > ### Title: Spain National map information > ### Aliases: SpainMap > > ### ** Examples > > name <- c("Ii") > main <- c("Multiplicative for males") > regionvalue <- c(0.131867619, -0.063994652, 0.088094096, + 0.019685552, 0.064671498, 0.012212161, + -0.088864474, -0.146079884, -0.017703536, + 0.050376721, 0.052476852, -0.022871202, + -0.093952332, 0.049266816, -0.101224890, + 0.001481333, -0.078523511) > > library(sf) Linking to GEOS 3.12.2, GDAL 3.8.5, PROJ 9.3.1; sf_use_s2() is TRUE > > SpainMap(regionvalue, main, name) ── tmap v3 code detected ─────────────────────────────────────────────────────── [v3->v4] `tm_tm_polygons()`: migrate the argument(s) related to the scale of the visual variable `fill` namely 'breaks', 'palette' (rename to 'values') to fill.scale = tm_scale(). [v3->v4] `tm_polygons()`: use 'fill' for the fill color of polygons/symbols (instead of 'col'), and 'col' for the outlines (instead of 'border.col'). This message is displayed once every 8 hours. [v3->v4] `tm_polygons()`: migrate the argument(s) related to the legend of the visual variable `fill` namely 'title' to 'fill.legend = tm_legend()' [v3->v4] `tm_layout()`: use `tm_title()` instead of `tm_layout(title = )` Error in `[.data.table`(d, , `:=`(bbox, do.call(get_bbox, as.list(.SD))), : attempt access index 4/4 in VECTOR_ELT Calls: -> print.tmap -> step4_plot -> [ -> [.data.table Execution halted * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [16s/17s] [17s/17s] OK * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * checking for new files in some other directories ... OK * DONE Status: 2 ERRORs See ‘/data/blackswan/ripley/R/packages/tests-devel/CvmortalityMult.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 9:17.98, 490.80 + 49.54