* using log directory ‘/data/localhost/ripley/R/packages/tests-donttest/CoxBoost.Rcheck’
* using R Under development (unstable) (2026-07-23 r90290)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)
    GNU Fortran (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)
* running under: Fedora Linux 44 (Server Edition)
* using session charset: UTF-8
* current time: 2026-07-23 09:35:41 UTC
* checking for file ‘CoxBoost/DESCRIPTION’ ... OK
* this is package ‘CoxBoost’ version ‘1.5.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CoxBoost’ can be installed ... OK
* used C compiler: ‘gcc (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)’
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [11s/15s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... OK
* checking examples with --run-donttest ... [43s/56s] ERROR
Running examples in ‘CoxBoost-Ex.R’ failed
The error most likely occurred in:

> ### Name: estimPVal
> ### Title: Estimate p-values for a model fitted by CoxBoost
> ### Aliases: estimPVal
> ### Keywords: models regression survial
> 
> ### ** Examples
> 
> 
> ## No test: 
> #   Generate some survival data with 10 informative covariates
> n <- 200; p <- 100
> beta <- c(rep(1,10),rep(0,p-10))
> x <- matrix(rnorm(n*p),n,p)
> real.time <- -(log(runif(n)))/(10*exp(drop(x %*% beta)))
> cens.time <- rexp(n,rate=1/10)
> status <- ifelse(real.time <= cens.time,1,0)
> obs.time <- ifelse(real.time <= cens.time,real.time,cens.time)
> 
> #   Fit a Cox proportional hazards model by CoxBoost
> 
> cbfit <- CoxBoost(time=obs.time,status=status,x=x,stepno=100,
+                   penalty=100)
> 
> #   estimate p-values
> 
> p1 <- estimPVal(cbfit,x,permute.n=10)

 *** caught segfault ***
address 0x1, cause 'memory not mapped'

Traceback:
 1: find.best(x.double.vec[[stratum.index]], model[[model.index]]$n,     p, model[[model.index]]$uncens.C, model[[model.index]]$uncens,     model[[model.index]]$actual.beta, model[[model.index]]$actual.risk.score,     model[[model.index]]$actual.linear.predictor, model[[model.index]]$weight.at.event,     model[[model.index]]$max.nz.vec, model[[model.index]]$max.1.vec,     weightmat.times.risk, weightmat.times.risk.sum, is.matrix(weights),     model[[model.index]]$penalty, criterion, actual.step, x.is.01,     model[[model.index]]$presel.index, model[[model.index]]$first.score,     heuristic = !(length(object$strata) > 1 && !coupled.strata &&         (criterion == "hscore" || criterion == "hpscore")))
 2: CoxBoost(time = time, status = status, x = actual.x, unpen.index = unpen.index,     standardize = FALSE, stepno = stepno, penalty = penalty,     trace = FALSE, ...)
 3: FUN(X[[i]], ...)
 4: lapply(1:permute.n, eval.permute)
 5: unlist(lapply(1:permute.n, eval.permute))
 6: matrix(unlist(lapply(1:permute.n, eval.permute)), length(pen.index),     permute.n)
 7: estimPVal(cbfit, x, permute.n = 10)
An irrecoverable exception occurred. R is aborting now ...
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/localhost/ripley/R/packages/tests-donttest/CoxBoost.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 2:43.64, 99.67 + 16.95