* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/CSFA.Rcheck’
* using R Under development (unstable) (2023-07-22 r84734)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2)
    GNU Fortran (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2)
* running under: Fedora 34 (Workstation Edition)
* using session charset: UTF-8
* checking for file ‘CSFA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘CSFA’ version ‘1.2.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CSFA’ can be installed ... [19s/20s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [37s/38s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [26s/27s] OK
* checking examples with --run-donttest ... [10s/10s] ERROR
Running examples in ‘CSFA-Ex.R’ failed
The error most likely occurred in:

> ### Name: CSanalysis,matrix,matrix,character-method
> ### Title: Connectivity Score Analysis.
> ### Aliases: CSanalysis,matrix,matrix,character-method
> 
> ### ** Examples
> 
> ## Don't show: 
> data("dataSIM",package="CSFA")
> Mat1 <- dataSIM[,c(1:6)]
> Mat2 <- dataSIM[,-c(1:6)]
> ZHANG_analysis <- CSanalysis(Mat1,Mat2,"CSzhang")
dev.new(): using pdf(file="Rplots20.pdf")
> ## End(Don't show)
> ## No test: 
> data("dataSIM",package="CSFA")
> Mat1 <- dataSIM[,c(1:6)]
> Mat2 <- dataSIM[,-c(1:6)]
> 
> MFA_analysis <- CSanalysis(Mat1,Mat2,"CSmfa")
dev.new(): using pdf(file="Rplots21.pdf")

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Error: Select or input 1 or more components!
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [16s/17s] OK
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/CSFA.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 3:29.62, 184.66 + 19.16