* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/BeeBDC.Rcheck’
* using R Under development (unstable) (2026-01-21 r89311)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* checking for file ‘BeeBDC/DESCRIPTION’ ... OK
* this is package ‘BeeBDC’ version ‘1.3.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... INFO
Package suggested but not available for checking: ‘bdc’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BeeBDC’ can be installed ... [35s/37s] OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [54s/55s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... NOTE
Unknown package ‘bdc’ in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [33s/33s] OK
* checking examples with --run-donttest ... [29s/29s] ERROR
Running examples in ‘BeeBDC-Ex.R’ failed
The error most likely occurred in:

> ### Name: jbd_coordinates_transposed
> ### Title: Identify transposed geographic coordinates
> ### Aliases: jbd_coordinates_transposed
> 
> ### ** Examples
> 
> ## No test: 
> if(requireNamespace("rnaturalearthdata")){
+ database_id <- c(1, 2, 3, 4)
+ scientificName <- c(
+   "Rhinella major", "Scinax ruber",
+   "Siparuna guianensis", "Psychotria vellosiana"
+ )
+ decimalLatitude <- c(63.43333, -14.43333, -41.90000, -46.69778)
+ decimalLongitude <- c(-17.90000, -67.91667, -13.25000, -13.82444)
+ country <- c("BOLIVIA", "bolivia", "Brasil", "Brazil")
+ 
+ x <- data.frame(
+   database_id, scientificName, decimalLatitude,
+   decimalLongitude, country
+ )
+ 
+ # Get country codes
+ x <- bdc::bdc_country_standardized(data = x, country = "country")
+ 
+ jbd_coordinates_transposed(
+   data = x,
+   idcol = "database_id",
+   sci_names = "scientificName",
+   lat = "decimalLatitude",
+   lon = "decimalLongitude",
+   country = "country_suggested",
+   countryCode = "countryCode",
+   border_buffer = 0.2,
+   save_outputs = FALSE,
+   scale = "medium"
+ ) 
+ }
Error in loadNamespace(x) : there is no package called ‘bdc’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [57s/60s]
 [57s/61s] OK
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/BeeBDC.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 6:22.40, 332.04 + 38.38